FC872015

Overview
NameFC872015
Unique NameFC872015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872015 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3 
Query:    3 GAEEIF*LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 119
            GAEE+F LGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  320 GAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of FC872015 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3 
Query:    3 GAEEIF*LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 119
            GAEE+F LGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  320 GAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of FC872015 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.694e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:    3 GAEEIF*LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 119
            GAEE++ LGPLNEYERIGLEKAK ELAGSIQKG+ F +K
Sbjct:  316 GAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354
The following BLAST results are available for this feature:
BLAST of FC872015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MDHG2_BRANA1.957e-1179.49Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA1.957e-1179.49Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH5.694e-1179.49Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BD12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872015 ID=FC872015; Name=FC872015; organism=Citrus clementina; type=EST; length=369bp
GGGGAGCTGAAGAAATCTTCTAACTTGGACCTTTAAATGAATATGAGAGG
ATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATTCAAAAGGG
CATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTCCATCGGTT
AAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGCAAGCCTTA
ATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACAAGCGACGA
ATTGGCATGTAAAGCAGTTTGAATGAGCTCATTTCGTTTCAGAGGAGCAA
AACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
back to top