FC872124

Overview
NameFC872124
Unique NameFC872124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872124_ssr553 microsatellite FC872124_ssr553:553..564. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9867 contig Ccv1_Contig9867:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.983e-83
Identity = 155/293 (52.90%), Postives = 192/293 (65.53%), Query Frame = 2
Query:    5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVNPIPV-IRIEADPVSESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPN 874
            ECVRLL+L ++AFPVD NVGRIAVR+GWVPLQPLP  L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC K  PNC ACP+RGEC+HFASA ASAR ALP P  + + ++         PP+ +  I + + +E    S +     NCEPIIEEP SPG +C                     PT++L   +F       ME N  + +   S ALVAL     S+PT KLK  + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW+PGE+ N
Sbjct: 1547 ECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRENCEPIIEEPASPGQEC-TEITESDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETAN 1838          
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 1.191e-82
Identity = 166/295 (56.27%), Postives = 193/295 (65.42%), Query Frame = 2
Query:    5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVN-PIPVIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGES 868
            ECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP  L +HLL+ YP+++ IQ YLWPRLC LDQKTLYELHYQMITFGK+FC K  PNC ACP++GEC+HFASA ASAR ALP        ++E G G     PL ++ P P  R +   V   SE   ++  CEPIIEEP SP P+                      PT+RL    F  N    ME NK  LQD   SSALVALTAE AS+P  KLK  + LRTEH VY LPD H LL   ++R+PDDP  YLLAIW+PGE+
Sbjct:  956 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALP--------STEKGMGTPDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPE--TAEVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNK-ELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGET 1239          
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.759e-63
Identity = 139/296 (46.96%), Postives = 171/296 (57.77%), Query Frame = 2
Query:    5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNC-EPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD----SSALVALTAEAASV---PTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGES 868
            ECVRLL L+H AFPVD NVGRIAVRLG VPL+PLP  + +H L EYP +D IQ YLWPRLC L Q+TLYELHYQMITFGK+FC K  PNC ACP++ ECK+FASA  S++  L  P  K    + F N    S  + V+    I +  + VS        C +P++E P SP  +                      P +       K++  + + ++  M       S ALV  T E A +   P RK+K    LRTEH VYVLPD HELL  F+RR  DDPSPYLLAIW PGE+
Sbjct:  596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTFMN--AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGET 889          
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.015e-57
Identity = 132/297 (44.44%), Postives = 166/297 (55.89%), Query Frame = 2
Query:    5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQC-------XXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPN 874
            ECVRLLSL  IAFPVD NVGRIAVRLGWVPLQPLP +L +HLL+                       LYELHY MITFGK+FC K  PNC ACP++ EC+H++SA ASAR ALP P      +        +  P+VVN  P + +  +   E+  +  NCEPIIEEP SP P+                             PT+ L +   +    + + +NK     S  LV L+  AA++P RKLK    LRTEHHV+ LPD H +L GF+RR+ +D  PYLLAIW+PGE+ N
Sbjct:  888 ECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLE-----------------------LYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEA-QRSQNCEPIIEEPASPEPEYIEHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNK---EAGTSHDLVVNK-EAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVN 1156          
The following BLAST results are available for this feature:
BLAST of FC872124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH6.983e-8352.90Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH1.191e-8256.27Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML3_ARATH2.759e-6346.96DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
DML2_ARATH1.015e-5744.44DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2CH05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872124 ID=FC872124; Name=FC872124; organism=Citrus clementina; type=EST; length=875bp
GGGGGAGTGTGTACGGCTTTTGTCACTTCAACACATTGCCTTTCCTGTTG
ATGTGAATGTTGGGCGAATAGCTGTGCGTCTAGGCTGGGTTCCCCTCCAA
CCCCTGCCTGGAGATCTTCACATACATCTTTTAAAAGAGTACCCAGTGGT
GGATAAAATTCAAATGTATCTTTGGCCACGACTATGCTACCTTGACCAAA
AAACATTATATGAACTACATTACCAAATGATTACCTTCGGAAAGATCTTC
TGCAAGAAGAGGAGTCCAAATTGCGGTGCTTGTCCATTGAGGGGGGAGTG
CAAACACTTTGCCAGTGCAGTTGCGAGTGCAAGGTTTGCCTTACCAGGGC
CATCATAAAAAGGGATAGTGACGTCAGAGTTTGGTAATGGAATTGGACAA
AGCCCTCCTTTGGTTGTCAATCCAATACCAGTGATTCGCATTGAGGCTGA
TCCGGTTTCAGAATCTGGATATCAAATCAACAACTGTGAGCCTATCATTG
AGGAGCCACGGTCACCAGGGCCTCAATGTTCAGAATCTCCAGAATCTGAG
ATTGATGATGATGATTTCAGCATTGGTGACATTGAAGAGATTCCTACTCT
CAGACTGCAAGAAAGGGAGTTCAAGGAAAATTTCCCAAATTTCATGGAGA
TGAACAAGGTCATGCTTCAAGACTCCAGTGCTTTAGTTGCTTTGACTGCA
GAAGCTGCATCCGTGCCCACAAGGAAACTGAAGAGATGTGCTCATTTACG
CACAGAGCACCATGTCTATGTACTTCCAGATGCGCATGAACTACTTCGAG
GGTTTGATAGGCGAGATCCTGATGATCCGTCTCCCTACCTTCTTGCGATA
TGGTCACCAGGTGAATCTCCAAATT
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