FC872124
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2) HSP 1 Score: 307.375 bits (786), Expect = 6.983e-83 Identity = 155/293 (52.90%), Postives = 192/293 (65.53%), Query Frame = 2 Query: 5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVNPIPV-IRIEADPVSESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPN 874 ECVRLL+L ++AFPVD NVGRIAVR+GWVPLQPLP L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC K PNC ACP+RGEC+HFASA ASAR ALP P + + ++ PP+ + I + + +E S + NCEPIIEEP SPG +C PT++L +F ME N + + S ALVAL S+PT KLK + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW+PGE+ N Sbjct: 1547 ECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRENCEPIIEEPASPGQEC-TEITESDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETAN 1838
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2) HSP 1 Score: 306.605 bits (784), Expect = 1.191e-82 Identity = 166/295 (56.27%), Postives = 193/295 (65.42%), Query Frame = 2 Query: 5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVN-PIPVIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGES 868 ECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQKTLYELHYQMITFGK+FC K PNC ACP++GEC+HFASA ASAR ALP ++E G G PL ++ P P R + V SE ++ CEPIIEEP SP P+ PT+RL F N ME NK LQD SSALVALTAE AS+P KLK + LRTEH VY LPD H LL ++R+PDDP YLLAIW+PGE+ Sbjct: 956 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALP--------STEKGMGTPDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPE--TAEVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNK-ELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGET 1239
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 2.759e-63 Identity = 139/296 (46.96%), Postives = 171/296 (57.77%), Query Frame = 2 Query: 5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNC-EPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD----SSALVALTAEAASV---PTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGES 868 ECVRLL L+H AFPVD NVGRIAVRLG VPL+PLP + +H L EYP +D IQ YLWPRLC L Q+TLYELHYQMITFGK+FC K PNC ACP++ ECK+FASA S++ L P K + F N S + V+ I + + VS C +P++E P SP + P + K++ + + ++ M S ALV T E A + P RK+K LRTEH VYVLPD HELL F+RR DDPSPYLLAIW PGE+ Sbjct: 596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTFMN--AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGET 889
BLAST of FC872124 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.015e-57 Identity = 132/297 (44.44%), Postives = 166/297 (55.89%), Query Frame = 2 Query: 5 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVVDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS*KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQC-------XXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPN 874 ECVRLLSL IAFPVD NVGRIAVRLGWVPLQPLP +L +HLL+ LYELHY MITFGK+FC K PNC ACP++ EC+H++SA ASAR ALP P + + P+VVN P + + + E+ + NCEPIIEEP SP P+ PT+ L + + + + +NK S LV L+ AA++P RKLK LRTEHHV+ LPD H +L GF+RR+ +D PYLLAIW+PGE+ N Sbjct: 888 ECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLE-----------------------LYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEA-QRSQNCEPIIEEPASPEPEYIEHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNK---EAGTSHDLVVNK-EAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVN 1156 The following BLAST results are available for this feature:
BLAST of FC872124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872124 ID=FC872124; Name=FC872124; organism=Citrus clementina; type=EST; length=875bpback to top |