FC872130

Overview
NameFC872130
Unique NameFC872130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14431 contig Ccv1_Contig14431:245..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872130 vs. ExPASy Swiss-Prot
Match: SYP61_ARATH (Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.199e-52
Identity = 108/166 (65.06%), Postives = 126/166 (75.90%), Query Frame = 3 
Query:    9 AIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQEKIIDELGTEMDSTSNRLDFVQXXXXXXXXXXXXXGQIMM 506
            AI VA++DPSWYGID+ ELEKRRRWTS ARTQV ++K  VL+G  +  G   AS +RRELMR+PNS +A        +D+D F+QSESDRQ+LL+KQQDEELDELS SVQRIGGVGLTIHDELVAQE+IIDEL TEMDST NRL+FVQ             GQ+MM
Sbjct:   63 AITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSS-GAGHASEVRRELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMM 227
The following BLAST results are available for this feature:
BLAST of FC872130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP61_ARATH1.199e-5265.06Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionC05701A03SK AbsCOv1 Citrus clementina cDNA clone C05701A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872130 ID=FC872130; Name=FC872130; organism=Citrus clementina; type=EST; length=717bp
CGGCCGGGGCTATTGGTGTGGCAAGCAGAGATCCTTCTTGGTATGGTATT
GATGACATTGAACTTGAAAAACGAAGGAGATGGACCAGCACTGCTCGTAC
TCAGGTCAGCAGCATGAAGAAAGCTGTATTATCTGGGGGTGCGAATGGTG
TTGGGACTATGAGTGCAAGTGGAATGCGTCGGGAATTAATGAGGCTTCCA
AATTCTCATCAGGCTAAATCAAACCAGTACGCTGCGGCCCAAGATAATGA
TGATTTTATCCAGTCAGAATCTGATAGACAATTGCTTCTTGTAAAGCAAC
AGGATGAGGAGTTGGATGAACTTAGTGCAAGCGTGCAGAGAATTGGAGGT
GTTGGGCTTACCATACATGATGAACTCGTAGCACAGGAGAAGATTATAGA
TGAACTTGGTACGGAAATGGACAGCACATCTAATCGTCTTGATTTTGTTC
AGAAAAAAGTGGCTATGGTCATGAAGAAGGCCAGCGCCAAGGGTCAAATT
ATGATGATATTATTTTTGATTGCTCTGTTTATCGTTCTATTTGTTCTGGT
CTTCCTTACTTAGGCTGGAGACGAAACCAGCCTATGATGTTCATACATAG
ACGGGCTTTTGGTTGTCGAAATAATTTCAAATGTTTGATAGGGAGGCTAC
CAGACATTGATTGGTTGAACTGGATATGCTCAAGTAAAGAAAATCTATGT
GCTTGGAAGGGATTTTA
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