FC872138

Overview
NameFC872138
Unique NameFC872138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9868 contig Ccv1_Contig9868:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872138 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 87/204 (42.65%), Postives = 115/204 (56.37%), Query Frame = 3
Query:  147 SAQAIILPPRPSMEALY--GSGLSPGPMTLVSSFFAEDLNNQSFSQLLAGAMASPLASKQAQSFL---------VXXXXXXXXXXXXXXXXFKENRPTSLMIARSP-LFTVPPGLSPSGLLNSPGFFSPQSP----FGMSHQQALATVTAQAFLAQSSMHMQAEYQPSLLSAPEESLTCNLSVTPNEPSQQQMPHSNSAPQSSM 710
            S   I LPPRP  E  +  G G SPGPMTLVS+ F++    +SFSQLLAGAMASP A+  A + +         V                FK++RPT LMI + P +FTVPPGLSP+ LL+SP FF   SP    FGM+HQQALA VTAQA +  +++HMQ   Q    S+ ++           + S  ++P  +SAP+S +
Sbjct:   19 SRPTISLPPRPFGEMFFSGGVGFSPGPMTLVSNLFSDPDEFKSFSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDPRFKQSRPTGLMITQPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQA-VQGNNVHMQQSQQSEYPSSTQQQ-----QQQQQQASLTEIPSFSSAPRSQI 216          
BLAST of FC872138 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 80/165 (48.48%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  147 SAQAIILPPRPSMEALY--GSGLSPGPMTLVSSFFAEDLNNQSFSQLLAGAMASP-----LASKQAQSFLVXXXXXXXXXXXXXXXXFKENRPTSLMIARS---PLFTVPPGLSPSGLLNSP---GFFSP-QSPFGMSHQQALATVTAQAFLAQSSMHMQAEYQP 599
            S   + LPPRP  E  +  G G SPGPMTLVS+ F +    +SFSQLLAGAM+SP      A+    S                   FK+NRPT LMI++S    +FTVPPGLSP+ LL+SP   G FSP Q  +GM+HQQALA VTAQA  A ++M  Q EY P
Sbjct:   18 SRPTLSLPPRPFSEMFFNGGVGFSPGPMTLVSNMFPDSDEFRSFSQLLAGAMSSPATAAAAAAAATASDYQRLGEGTNSSSGDVDPRFKQNRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLGLFSPVQGSYGMTHQQALAQVTAQAVQANANMQPQTEYPP 182          
The following BLAST results are available for this feature:
BLAST of FC872138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRKY3_ARATH5.725e-2942.65Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY4_ARATH4.846e-2848.48Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC05701A12SK AbsCOv1 Citrus clementina cDNA clone C05701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872138 ID=FC872138; Name=FC872138; organism=Citrus clementina; type=EST; length=737bp
CGGCCGGGCTCAAGAGGATAAAAGAAGCCTCTTACCCATCCTTCAAGTTT
TGTTGCTGAATAAACCAACTTTGTGCACAAAGGCCAAAGCTCAGACCTTT
TATTTTACTGAAATGGCAAGGGGGAAAGAGGACTTAACGAAGAAGAAGCG
CCCAAGCAATCATTCTCCCTCCTCGTCCTTCAATGGAGGCTTTATATGGG
TCTGGTTTGAGCCCTGGACCCATGACTCTGGTGTCTAGCTTCTTTGCTGA
GGACTTGAACAATCAATCTTTCTCTCAGCTTCTTGCTGGAGCCATGGCTT
CTCCATTGGCATCTAAGCAAGCTCAGAGCTTTTTGGTTGATTACAGTAAA
GATGGGGATGGAGATGGGGACGACAAGAGTTATGGTTTTAAAGAGAATAG
GCCAACAAGTTTGATGATTGCAAGGTCTCCATTGTTTACTGTTCCTCCTG
GGTTAAGCCCTTCTGGGTTGCTTAATTCACCTGGCTTCTTTTCACCTCAG
AGCCCATTTGGAATGTCCCACCAGCAGGCGTTGGCTACAGTTACAGCTCA
AGCTTTCCTAGCTCAATCTAGTATGCACATGCAAGCTGAATATCAACCTT
CATTGTTATCAGCTCCAGAAGAGTCATTGACTTGTAATCTATCAGTCACT
CCCAATGAACCTTCTCAACAGCAGATGCCACATTCAAACTCAGCCCCTCA
AAGTTCTATGATGGAACCNACTGGAGTCTCTCATTCT
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