FC872153

Overview
NameFC872153
Unique NameFC872153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872153 vs. ExPASy Swiss-Prot
Match: HEMH_ORYSI (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 5.947e-22
Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 3 
Query:   12 YDSKRNELPPPVTVWEWGWTRSAETWNGRXXXXXXXXXXXXEVTTGEGFLHQWGILPLF 188
            YDSKR+ELPPPVTVWEWGWT+SAETWNGR            EVTTGEGFLHQWGILPLF
Sbjct:  467 YDSKRDELPPPVTVWEWGWTKSAETWNGRAAMLAVLALLVLEVTTGEGFLHQWGILPLF 525
[Close]
BLAST of FC872153 vs. ExPASy Swiss-Prot
Match: HEMH2_ORYSJ (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.947e-22
Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 3 
Query:   12 YDSKRNELPPPVTVWEWGWTRSAETWNGRXXXXXXXXXXXXEVTTGEGFLHQWGILPLF 188
            YDSKR+ELPPPVTVWEWGWT+SAETWNGR            EVTTGEGFLHQWGILPLF
Sbjct:  467 YDSKRDELPPPVTVWEWGWTKSAETWNGRAAMLAVLALLVLEVTTGEGFLHQWGILPLF 525
[Close]
BLAST of FC872153 vs. ExPASy Swiss-Prot
Match: HEMH2_ARATH (Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.712e-19
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:    9 TYDSKRNELPPPVTVWEWGWTRSAETWNGRXXXXXXXXXXXXEVTTGEGFLHQWGILP 182
            TYDS+R ELP PVT+WEWGWT+SAETWNGR            EVTTG+GFLHQWGILP
Sbjct:  453 TYDSQRRELPAPVTMWEWGWTKSAETWNGRAAMLAVLALLVLEVTTGKGFLHQWGILP 510
The following BLAST results are available for this feature:
BLAST of FC872153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HEMH_ORYSI5.947e-2276.27Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ORYSJ5.947e-2276.27Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ARATH4.712e-1968.97Ferrochelatase-2, chloroplastic OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC05701C04SK AbsCOv1 Citrus clementina cDNA clone C05701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872153 ID=FC872153; Name=FC872153; organism=Citrus clementina; type=EST; length=529bp
GCCGGGGCACATATGATTCAAAACGTAATGAGCTACCTCCACCTGTAACA
GTCTGGGAATGGGGTTGGACCAGAAGTGCCGAGACTTGGAATGGAAGAGC
TGCTATGCTGGCAGTGCTTGTTCTGTTGGTCCTAGAGGTCACCACTGGAG
AGGGGTTTCTGCATCAGTGGGGCATATTGCCCTTGTTTCAGTAAATGGAG
ATCTAATAAAGATTCTCTCTGTTTCTGCTATCAAGATCGTCAAGTGTAAA
TTTTACACATTCTATTAGCATTCCACCCTACATTTTCGTTTCACTGGGTA
GCATTGATGTCTACCATCACTGTAGATGGATTTGGTTAATAGTTTCTGAC
TTTCTGTGCAAGTTACACCGCACCACTTTTGGTGAAAGTAAAAGGAAAAG
GAAAAACAGCATATAGACACTGTCACACTGTAATATAATACGGTTTTGTT
ATGTCTGTACTTGATGCAATTTTCTCTGAATGATTATGTTGTAAAATTTT
GACCTCTTTAGGGTCTGCAAAAAAAAAAA
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