FC872236
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1) HSP 1 Score: 410.609 bits (1054), Expect = 5.556e-114 Identity = 206/281 (73.31%), Postives = 228/281 (81.14%), Query Frame = 2 Query: 5 RVGLAMWRSNSSSENPPMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 + L MWRS SS + M+I DE + GK S + D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V++ RK +LE + DN DL RG IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVT Sbjct: 1526 KASLGMWRS-SSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVT 1805
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 3.199e-61 Identity = 131/256 (51.17%), Postives = 165/256 (64.45%), Query Frame = 2 Query: 86 GKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 GK SG L + GLFPRPW ++ S+ V++ F LLG V+AKALQDGR+LDLP S AFYKL+LG EL DI D E K L EL ++ RK+ D+ DL F G IEDLCL+F LPGY DY L P N V+++NLEEYI +V+ATV GI +Q+EAFR+GFNQVF I L+IF EL+ +LCG +L+ + +HIKFDHGYT+ SP + LL+I+ EF +QQRAF QFVT Sbjct: 1183 GKPVEHSGVLASSS-GLFPRPWSGTSTTSD------VLQKFVLLGTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVT 1431
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.764e-43 Identity = 112/290 (38.62%), Postives = 157/290 (54.14%), Query Frame = 2 Query: 5 RVGLAMWRSNSSSENPPMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIICRKQHLE---SMTSDNCEEAVD-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG-RRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 R L +WR + + P G + + N+ G L P G +P +KV FR LG++MAKA+ D RL+DLP FYK +L E L HD+ D + + L I+ +K+ LE S T ++ + A++ L G +EDL LDFTLPG+P+ LK G ++ V I+NLEEY+ LV+ + G+ RQ ++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+ L EI+ F +QQR F QFVT Sbjct: 1644 RADLGLWRGEEVTLSNPK---GSQEGTKYIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVT 1919
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 1.110e-29 Identity = 84/246 (34.15%), Postives = 126/246 (51.22%), Query Frame = 2 Query: 116 VHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 V+ GLFP P P + E + I F LG+ +A+++ D R++ + F+ F+ + L + + D L+ L +I K + T D++ +EDL LDFTLPG+P L P + + N+ +Y++ V+D TV G+ +Q+EAF+ GF+ VF TSLQ+ T HEL L E W A L + I DHGYT +SP I LL +M + +QR F QF+T Sbjct: 1347 VYQASGLFPSPIPLLGSSPEN---ERKISLFFALGQFVARSIYDSRIISIQFNPLFFARNI--PLTISSVAKVDKGLANSLRYLEKLIPGKNPTNAET--------DIK-----LEDLHLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFIT 1574
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27 Identity = 89/285 (31.23%), Postives = 137/285 (48.07%), Query Frame = 2 Query: 5 RVGLAMWRSNSSSENPPMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDI--IPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 R L MWR NS S M++D + + LFP P P ++ KVIE F LG +A++L D R+LD FS F++L+ H + ++ +P D E ++ EL ++ + + + + V + +E L L FT+PG D L PG N +N N+EEYI V+D + GI +Q++AF GF++VF + I P EL + E W A L ++ +HGYT S I + + I+ F ++R F QF+T Sbjct: 1156 RKSLNMWRCNSYSYRSEMDVDTTDD-------------YITTLLFPEPLNPFSNNE------KVIELFGYLGTFVARSLLDNRILDFRFSKVFFELL--HRMSTPNVTTVPSDVETCLLMIEL---------VDPLLAKSLKYIVANKDDNMTLESLSLTFTVPGNDDIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLT 1410
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20 Identity = 73/219 (33.33%), Postives = 112/219 (51.14%), Query Frame = 2 Query: 197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 + YF+ +GR++AKAL DG+LLD+ F+ +FYK +LG ++ HDI D ++ K L+ L LE+ SD +DL F E+ + + DY LKPG N+ + EY+ LV + I Q+ AF GFN++ + IF EL+ L+ G E+ + L + ++ YTA SP I E++ F+ + F QFVT Sbjct: 3405 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL---------LENDVSD----ILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEI-DFDDLKANTEYT-SYTAGSPVIHWFWEVVKAFSKEDMARFLQFVT 3608
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20 Identity = 72/219 (32.88%), Postives = 112/219 (51.14%), Query Frame = 2 Query: 197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 + YF+ +GR++AKAL DG+LLD+ F+ +FYK +LG ++ HDI D ++ K L+ L LE+ SD +DL F E+ + + DY LKPG N+ + EY+ LV D + + I Q+ AF G N++ + IF EL+ L+ G E+ + L + ++ YT SP I E++ F+ + F QFVT Sbjct: 3382 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL---------LENDVSD----ILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEI-DFDDLKANTEYT-SYTVGSPVIRWFWEVVKAFSKEDMARFLQFVT 3585
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17 Identity = 66/211 (31.28%), Postives = 105/211 (49.76%), Query Frame = 2 Query: 266 PFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV----IICRKQHLESMTSDNCEEAVDLRFRGA----PIEDLCLDFT------LPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 P A++ +L E D + P A F K +++L + I+ K E + +E V G+ IEDL L+F + G+ LKP DE + ++N EEY+ L+ D + TGI +QMEAFR GFN+VF + L F+ E+ +LCG + W + + + GYT SP + + ++ + D+++AF QF T Sbjct: 2336 PKPPAWFNGILTWE-DFELVNPHRARFLKEIKDLAIKRRQILSNKGLSEDEKNTKLQELVLKNPSGSGPPLSIEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTT 2545
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16 Identity = 68/223 (30.49%), Postives = 107/223 (47.98%), Query Frame = 2 Query: 197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 + YFR +GR +A AL G+ +D F+ FYK +L L D+ D EF ++ ++ +LE E ++L F I+D+ + L + LK G EN+ + N EEYI L+ D G+ Q +AF GFN+V + L+ F EL+ +LCG +E+ W+ A+ H YT S I +++ E +++ QFVT Sbjct: 602 LTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPEFYN-----SIVWIKENNLE-------ECGLELFF----IQDMEI---LGKVTTHELKEGGENIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVT 799
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16 Identity = 65/223 (29.15%), Postives = 100/223 (44.84%), Query Frame = 2 Query: 197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847 ++YFR +GR +A AL G+ +D FS FYK +L + L D+ D EF L +N E DL + +++ L + LKP N+ + N EEYI +V + + G+ Q +AF GFN++ LQ F EL+ LLCG +E+ W+ A+ H Y S I+ + + E +++ QFVT Sbjct: 635 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSL--------------IWVKENNIEECDLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVT 832 The following BLAST results are available for this feature:
BLAST of FC872236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872236 ID=FC872236; Name=FC872236; organism=Citrus clementina; type=EST; length=847bpback to top |