FC872236

Overview
NameFC872236
Unique NameFC872236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 5.556e-114
Identity = 206/281 (73.31%), Postives = 228/281 (81.14%), Query Frame = 2
Query:    5 RVGLAMWRSNSSSENPPMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            +  L MWRS SS +   M+I  DE + GK S  + D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V++ RK +LE +  DN     DL  RG  IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVT
Sbjct: 1526 KASLGMWRS-SSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVT 1805          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.199e-61
Identity = 131/256 (51.17%), Postives = 165/256 (64.45%), Query Frame = 2
Query:   86 GKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            GK    SG L  +  GLFPRPW  ++  S+      V++ F LLG V+AKALQDGR+LDLP S AFYKL+LG EL   DI   D E  K L EL  ++ RK+       D+     DL F G  IEDLCL+F LPGY DY L P   N  V+++NLEEYI  +V+ATV  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVT
Sbjct: 1183 GKPVEHSGVLASSS-GLFPRPWSGTSTTSD------VLQKFVLLGTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVT 1431          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.764e-43
Identity = 112/290 (38.62%), Postives = 157/290 (54.14%), Query Frame = 2
Query:    5 RVGLAMWRSNSSSENPPMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIICRKQHLE---SMTSDNCEEAVD-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG-RRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            R  L +WR    + + P    G +  +    N+ G L   P G   +P             +KV   FR LG++MAKA+ D RL+DLP    FYK +L  E  L  HD+   D    + +  L  I+ +K+ LE   S T ++ + A++ L   G  +EDL LDFTLPG+P+  LK G ++  V I+NLEEY+ LV+   +  G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVT
Sbjct: 1644 RADLGLWRGEEVTLSNPK---GSQEGTKYIQNLQG-LFALPFGRTAKP----------AHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVT 1919          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.110e-29
Identity = 84/246 (34.15%), Postives = 126/246 (51.22%), Query Frame = 2
Query:  116 VHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            V+   GLFP P P    + E     + I  F  LG+ +A+++ D R++ + F+  F+   +   L +  +   D      L+ L  +I  K    + T        D++     +EDL LDFTLPG+P   L P   +  +   N+ +Y++ V+D TV  G+ +Q+EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+T
Sbjct: 1347 VYQASGLFPSPIPLLGSSPEN---ERKISLFFALGQFVARSIYDSRIISIQFNPLFFARNI--PLTISSVAKVDKGLANSLRYLEKLIPGKNPTNAET--------DIK-----LEDLHLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFIT 1574          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27
Identity = 89/285 (31.23%), Postives = 137/285 (48.07%), Query Frame = 2
Query:    5 RVGLAMWRSNSSSENPPMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDI--IPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            R  L MWR NS S    M++D  +              +    LFP P  P ++        KVIE F  LG  +A++L D R+LD  FS  F++L+  H +   ++  +P D E   ++ EL         ++ + + + +  V  +     +E L L FT+PG  D  L PG  N  +N  N+EEYI  V+D  +  GI +Q++AF  GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+T
Sbjct: 1156 RKSLNMWRCNSYSYRSEMDVDTTDD-------------YITTLLFPEPLNPFSNNE------KVIELFGYLGTFVARSLLDNRILDFRFSKVFFELL--HRMSTPNVTTVPSDVETCLLMIEL---------VDPLLAKSLKYIVANKDDNMTLESLSLTFTVPGNDDIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLT 1410          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 73/219 (33.33%), Postives = 112/219 (51.14%), Query Frame = 2
Query:  197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            + YF+ +GR++AKAL DG+LLD+ F+ +FYK +LG ++  HDI   D ++ K L+ L         LE+  SD     +DL F     E+  + +      DY LKPG  N+ +      EY+ LV    +   I  Q+ AF  GFN++     + IF   EL+ L+ G  E+ +   L  + ++   YTA SP I    E++  F+ +    F QFVT
Sbjct: 3405 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL---------LENDVSD----ILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEI-DFDDLKANTEYT-SYTAGSPVIHWFWEVVKAFSKEDMARFLQFVT 3608          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 72/219 (32.88%), Postives = 112/219 (51.14%), Query Frame = 2
Query:  197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            + YF+ +GR++AKAL DG+LLD+ F+ +FYK +LG ++  HDI   D ++ K L+ L         LE+  SD     +DL F     E+  + +      DY LKPG  N+ +      EY+ LV D  + + I  Q+ AF  G N++     + IF   EL+ L+ G  E+ +   L  + ++   YT  SP I    E++  F+ +    F QFVT
Sbjct: 3382 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL---------LENDVSD----ILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEI-DFDDLKANTEYT-SYTVGSPVIRWFWEVVKAFSKEDMARFLQFVT 3585          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 66/211 (31.28%), Postives = 105/211 (49.76%), Query Frame = 2
Query:  266 PFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV----IICRKQHLESMTSDNCEEAVDLRFRGA----PIEDLCLDFT------LPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            P   A++  +L  E D   + P  A F K +++L +    I+  K   E   +   +E V     G+     IEDL L+F       + G+    LKP   DE + ++N EEY+ L+ D  + TGI +QMEAFR GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF T
Sbjct: 2336 PKPPAWFNGILTWE-DFELVNPHRARFLKEIKDLAIKRRQILSNKGLSEDEKNTKLQELVLKNPSGSGPPLSIEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTT 2545          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 68/223 (30.49%), Postives = 107/223 (47.98%), Query Frame = 2
Query:  197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            + YFR +GR +A AL  G+ +D  F+  FYK +L     L D+   D EF        ++  ++ +LE       E  ++L F    I+D+ +   L     + LK G EN+ +   N EEYI L+ D     G+  Q +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVT
Sbjct:  602 LTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPEFYN-----SIVWIKENNLE-------ECGLELFF----IQDMEI---LGKVTTHELKEGGENIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVT 799          
BLAST of FC872236 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16
Identity = 65/223 (29.15%), Postives = 100/223 (44.84%), Query Frame = 2
Query:  197 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVT 847
            ++YFR +GR +A AL  G+ +D  FS  FYK +L   + L D+   D EF   L                  +N  E  DL    +  +++     L     + LKP   N+ +   N EEYI +V +  +  G+  Q +AF  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      Y   S  I+   + + E   +++    QFVT
Sbjct:  635 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSL--------------IWVKENNIEECDLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVT 832          
The following BLAST results are available for this feature:
BLAST of FC872236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
UPL3_ARATH5.556e-11473.31E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH3.199e-6151.17E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN1.764e-4338.62Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.110e-2934.15Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST6.733e-2731.23Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
UPL1_ARATH1.606e-2033.33E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH2.740e-2032.88E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
HECD1_HUMAN2.171e-1731.28E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
WWP2_MOUSE2.400e-1630.49NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
ITCH_HUMAN6.983e-1629.15E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AC01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872236 ID=FC872236; Name=FC872236; organism=Citrus clementina; type=EST; length=847bp
GGGGAGAGTCGGACTTGCAATGTGGAGGTCAAATTCCTCATCAGAGAATC
CGCCAATGGAAATTGATGGGGATGAAGGCAAAAGTGGTAAAACCAGTAAT
ATATCTGGAGATCTAGTTCATGCTCCTCTTGGGTTGTTCCCTCGACCTTG
GCCTCCTAGTGCTGATGCCTCTGAAGGTGGCCAGTTTAGTAAAGTTATTG
AATACTTCCGACTGCTTGGACGTGTAATGGCTAAAGCTCTTCAAGATGGG
AGGCTTTTAGACCTGCCATTTTCAACAGCATTCTACAAACTTGTTCTTGG
TCACGAGCTTGATTTGCATGATATTATTCCCTTTGATGCCGAGTTTGGGA
AGATTTTGCAAGAGTTGCATGTCATCATTTGTCGAAAACAACATTTAGAA
TCAATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTGCGTTTTCGTGG
GGCCCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAG
ACTATATTTTGAAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAG
GAATACATATCCTTGGTAGTTGATGCCACTGTCAAGACAGGCATCATGCG
GCAAATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACAT
CATTACAAATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGT
AGAGAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCA
TGGATACACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGG
GAGAATTCACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACT
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