FC872238

Overview
NameFC872238
Unique NameFC872238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: ALKB8_XENTR (Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 8.417e-44
Identity = 84/148 (56.76%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  216 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 659
            LE++YVH+VYD IA HFSSTR   WPK+  FL SLP GSLV D GCGNGKYLG+N D   IGCD S +L+ IC +R  E  V DA+++P+R+   DA ISIAV+HH +TE RR  A++EL+R+++KG   LI VWA+EQE K   +K+
Sbjct:  369 LEREYVHKVYDDIAGHFSSTRHTPWPKIGDFLASLPKGSLVADVGCGNGKYLGVNKDLCMIGCDRSKNLVDICRERTFEAFVCDALSVPFRAGAFDACISIAVIHHFATEERRIAALQELIRLLRKGGKALIYVWALEQEYKKNKSKY 516          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: ALKB8_MOUSE (Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.198e-43
Identity = 83/157 (52.87%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  189 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 659
            + S K   ELE+K+VH+VY+ IA HFSSTR + WP++  FL +LPSGS+V D GCGNGKYLG+N D + IGCD S +L+ IC +R  + LV DA+ +P RS   DA ISIAV+HH +T  RR +A++EL R+++ G   LI VWA+EQE K+  +K+
Sbjct:  361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKYLGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY 517          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: ALKB8_BOVIN (Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.344e-41
Identity = 82/155 (52.90%), Postives = 107/155 (69.03%), Query Frame = 3
Query:  195 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 659
            S K   +LE+ YVHRVY+ IA HFSSTR   WP +  FL +LPSGSLV D GCGNGKYLG+N + + IGCD S +L+ IC +R ++  V DA+ +P RS   DA ISIAV+HH +T  RR  A++ELVR+++ G   LI VWA+EQE     +K+
Sbjct:  363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLGINNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERRVAALQELVRLLRPGGKALIYVWAMEQEYNKKKSKY 517          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: ALKB8_HUMAN (Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.138e-40
Identity = 79/155 (50.97%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  195 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 659
            S K    LE++YVH+VY+ IA HFSSTR   WP +  FL +LPSGS+V D GCGNGKYLG+N + + IGCD S +L+ IC +R  +  V DA+ +P RS   DA ISIAV+HH +T  RR  A++E+VR+++ G   LI VWA+EQE     +K+
Sbjct:  363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKY 517          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: ALKB8_MACFA (Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.646e-40
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  195 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 659
            S +    LE++YVH+VY+ IA HFSSTR   WP +  FL +LPSGS+V D GCGNGKYLG+N + + +GCD S +L+ IC +R  +  V DA+ +P RS   DA ISIAV+HH +T  RR  A++E+VR+++ G   LI VWA+EQE     +K+
Sbjct:  363 SDEEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGVNKELYMVGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKY 517          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: TRM9_YEAST (tRNA (uracil-5-)-methyltransferase TRM9 OS=Saccharomyces cerevisiae GN=TRM9 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 73/148 (49.32%), Postives = 100/148 (67.57%), Query Frame = 3
Query:  198 IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICA---DRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 632
            I    E E++YVH+VY+ IAPHFS TR+  WP V  FL + P GS+ +D GCGNGKYLG+NPD + IG D S  LI+ CA   +  + +LVAD +NLP++++  D AISIAV+HH ST  RR + I  ++  +++G   LI  WA+EQ
Sbjct:    3 INQAAEKEQEYVHKVYNEIAPHFSQTRYKPWPIVTQFLKTRPMGSIGIDVGCGNGKYLGVNPDIYIIGSDRSDGLIE-CARGINPSYNLLVADGLNLPHKNETFDFAISIAVVHHWSTRERRVEVIRHVLSKLRQGGQALIYCWALEQ 149          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: K1456_MOUSE (Putative methyltransferase KIAA1456 OS=Mus musculus GN=Kiaa1456 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 68/143 (47.55%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  213 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 641
            ELEK++VH VY+  AP+F+  +   WP+V  FL     GSLV D GCG GKYL +N     +GCD    L++I  +RG EV+V D +NLP+R    DA ISI V+HH ST+ RR +AI+E+ RV+  G  ++I VWA+EQ+++
Sbjct:    7 ELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVHTLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKEMARVLAPGGQLMIYVWAMEQKNR 149          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: K1456_HUMAN (Putative methyltransferase KIAA1456 OS=Homo sapiens GN=C8orf79 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = 3
Query:  213 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 641
            +LEK++VH VY++ AP+FS  +   WP+V  FL     GSL+ D GCG GKYL +N     +GCD    L++I  +RG E +V D +NLP+R +  DA ISI V+HH ST+ RR +AI+E+ RV+  G  ++I VWA+EQ+++
Sbjct:    7 QLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQKNR 149          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: YAZ3_SCHPO (Uncharacterized protein C13D6.03c OS=Schizosaccharomyces pombe GN=SPAC13D6.03c PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.297e-33
Identity = 68/142 (47.89%), Postives = 100/142 (70.42%), Query Frame = 3
Query:  213 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 638
            E E +YVH+VYD IA HFS TR+  WP V  FL SLP GS+ +D GCGNGKY  +NP+ + IG D    L+KI ++ G  ++++D +++P+ S+  D A+SIAV+HH S E+RR +A++E++R + KG   L  VWA+EQ++
Sbjct:    4 EYENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVYMIGSDRCVKLVKIASNLG-PMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQEVLRPLVKGGKALFFVWALEQKN 144          
BLAST of FC872238 vs. ExPASy Swiss-Prot
Match: K1456_BOVIN (Putative methyltransferase KIAA1456 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.297e-33
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  213 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 641
            +LEK++VH VY++ AP+FS  +   WP+V  FL     GSL+ D GCG GKYL +N     +GCD    L++I   RG EV+V D +NLP+R    DA ISI V+HH ST+ RR +AI+E+ RV+  G  ++I VWA+EQ+++
Sbjct:    7 QLEKQHVHDVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVHTLGCDYCAPLVEIARSRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQKNR 149          
The following BLAST results are available for this feature:
BLAST of FC872238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ALKB8_XENTR8.417e-4456.76Alkylated DNA repair protein alkB homolog 8 OS=Xen... [more]
ALKB8_MOUSE3.198e-4352.87Alkylated DNA repair protein alkB homolog 8 OS=Mus... [more]
ALKB8_BOVIN1.344e-4152.90Alkylated DNA repair protein alkB homolog 8 OS=Bos... [more]
ALKB8_HUMAN1.138e-4050.97Alkylated DNA repair protein alkB homolog 8 OS=Hom... [more]
ALKB8_MACFA5.646e-4049.68Alkylated DNA repair protein alkB homolog 8 OS=Mac... [more]
TRM9_YEAST9.327e-3549.32tRNA (uracil-5-)-methyltransferase TRM9 OS=Sacchar... [more]
K1456_MOUSE1.759e-3347.55Putative methyltransferase KIAA1456 OS=Mus musculu... [more]
K1456_HUMAN1.759e-3346.15Putative methyltransferase KIAA1456 OS=Homo sapien... [more]
YAZ3_SCHPO2.297e-3347.89Uncharacterized protein C13D6.03c OS=Schizosacchar... [more]
K1456_BOVIN2.297e-3346.85Putative methyltransferase KIAA1456 homolog OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AC04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872238 ID=FC872238; Name=FC872238; organism=Citrus clementina; type=EST; length=748bp
GGGGATCTCCGTACAGTACACCTTCTGTTGTAACCCTAAGCCTAATCGCT
GAGATGTGAACTGAATCAGGAATTTCTGGAACTATGAGAGAAGTTAAAGT
AAAAGGTGCTTCTGATTTTTGTACCCTTGGAGCTGATGGAGAATCTAGCA
TTCATTCTGTATCTACAGGGGAGGACCAGCGATGCTCATCCTCAAGCATA
AAATCTACTCCTGAATTAGAAAAGAAGTATGTCCATCGTGTTTATGATGC
CATAGCTCCCCATTTCAGTTCCACTCGTTTCGCTAAGTGGCCAAAAGTTG
CCACTTTTTTGAATTCTTTGCCTTCAGGGTCTCTTGTCTTGGATGCAGGA
TGTGGAAATGGGAAGTATTTGGGTTTAAATCCGGATTGCTTCTTCATCGG
TTGTGATATTAGTCCTTCCTTAATTAAAATTTGTGCGGACAGGGGGCATG
AAGTTTTGGTTGCAGATGCTGTAAATCTCCCCTACAGATCTGATTTTGGC
GATGCAGCCATCTCTATAGCCGTATTACATCATCTGAGCACTGAAAGCAG
GAGAAAGAAAGCAATTGAAGAATTAGTTAGGGTTGTCAAAAAGGGTAGCT
TAGTTCTAATAACAGTCTGGGCAGTGGAACAAGAGGATAAATCATTAGTT
ACCAAATGGACTCCTCTTACTCAAAAGTATGTGGAAGAGTGGATAGGACC
TGGGAGTCCTCGAGTTCGTAGCCCTTCAGCTCGAACGTTAGAAAGCAT
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