FC872252

Overview
NameFC872252
Unique NameFC872252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872252 vs. ExPASy Swiss-Prot
Match: NAC8_ARATH (NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 3.736e-111
Identity = 189/262 (72.14%), Postives = 215/262 (82.06%), Query Frame = 3
Query:   33 MAGPSWLVDSNRIATKIKSASGTGDPERVKWKSNPTKACPNCHHVIDNSDVAHEWPGLPRGVKFDPSDQEIVWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDGSAAHFFYRAIKAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEEDEKDDNYVISKIFYQQQQ---AKYGDKIEQDILEST-GAIIPKVDPVTPKSVTPDPPRTER 806
            MAG SWL+DSNRIATKI SAS + DP +V WKSNP++ CP C HVIDNSDV  +WPGLPRGVKFDPSD EI+WHLLAK+GL GL+ HPFIDEFIPTV+QD GICYTHP+NLPGVK DG+ +HFF++AIKAYSTGTRKRRKI+ DDFG+VRWHKTGRTKPV+LDGVQ+GCKKIMVLY     GGKA KTNWVMHQYHLG EEDEK+ +YV+SKIFYQQ Q    K GDK EQ++ E    A+ P  DPVTPK  TP+P    R
Sbjct:    1 MAGRSWLIDSNRIATKIMSASASSDPRQVVWKSNPSRHCPKCQHVIDNSDVVDDWPGLPRGVKFDPSDPEIIWHLLAKSGLSGLSSHPFIDEFIPTVNQDDGICYTHPKNLPGVKSDGTVSHFFHKAIKAYSTGTRKRRKIHDDDFGDVRWHKTGRTKPVVLDGVQRGCKKIMVLY-----GGKAVKTNWVMHQYHLGIEEDEKEGDYVVSKIFYQQPQQLVVKRGDKAEQEVSEDIFAAVTPTADPVTPKLATPEPRNAVR 257          
BLAST of FC872252 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 55/190 (28.95%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  207 PRGVKFDPSDQEIVWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPG---VKQDGSAAHFFYRAIKAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQK---GCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEEDEKDDNYVISKIFYQQQQAKYGDKIEQDILESTGAIIPKVD 758
            P G +F P+D+EIV H L    L+    H  +DE I TVD    IC   P +LP    +K      +FF      Y+ G ++RR+ N        W KTG+T  VM     +   G K+++V      +     KT+WVMH+YH  +    +   Y + K+ ++ ++ +         +E   ++IP V+
Sbjct:    4 PVGFRFRPNDEEIVDHYLRPKNLDSDTSH--VDEVISTVD----ICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGF-----WKKTGKTMTVMRKRGNREKIGEKRVLVF-----KNRDGSKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVN 177          
The following BLAST results are available for this feature:
BLAST of FC872252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NAC8_ARATH3.736e-11172.14NAC domain-containing protein 8 OS=Arabidopsis tha... [more]
NAC4_ARATH4.696e-1328.95NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872252 ID=FC872252; Name=FC872252; organism=Citrus clementina; type=EST; length=904bp
GCGGGGAAAGAAGCGAAGCAGAGCAAAAAGTGATGGCTGGACCATCATGG
TTGGTGGACAGTAACAGAATTGCTACAAAGATCAAGAGTGCATCTGGCAC
AGGTGATCCGGAAAGAGTTAAATGGAAGAGCAATCCTACAAAAGCTTGTC
CCAATTGTCACCATGTCATCGACAACAGTGATGTTGCTCACGAGTGGCCA
GGATTACCCAGGGGTGTGAAATTTGACCCATCTGATCAAGAAATTGTATG
GCATTTACTTGCAAAAGCTGGTTTGGAAGGCTTGAATCCCCATCCATTTA
TTGATGAGTTCATCCCAACTGTTGATCAAGATGGTGGAATCTGTTACACC
CATCCTCAGAATTTGCCAGGTGTTAAGCAAGATGGAAGTGCAGCACACTT
CTTTTATAGAGCTATCAAGGCTTACAGTACTGGAACTCGAAAGCGTAGAA
AGATAAATGGTGATGATTTTGGTGAGGTGCGCTGGCACAAGACTGGCAGG
ACTAAACCAGTGATGTTAGATGGGGTTCAAAAAGGGTGTAAGAAGATTAT
GGTTCTCTATATGAGCATGGTCAGGGGAGGGAAAGCTGAGAAAACTAATT
GGGTGATGCACCAGTATCACTTGGGAACAGAGGAGGATGAAAAGGATGAC
AACTATGTTATATCTAAAATATTTTATCAGCAGCAACAGGCCAAGTATGG
TGATAAAATTGAACAAGATATTCTTGAAAGCACTGGTGCCATCATTCCAA
AAGTAGATCCAGTCACTCCTAAGTCAGTGACTCCAGACCCACCTCGTACT
GAAAGGCATCCTGATTTTGGCCCACGACAAGAGTCTCCTACTACAGATGC
ATTTGATCAGCAATCTGAGATAAGGCGTGTGGAAGAGCTCCCACCTTTAT
GTGA
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