FC872254

Overview
NameFC872254
Unique NameFC872254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length891
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872254 vs. ExPASy Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.936e-105
Identity = 190/266 (71.43%), Postives = 218/266 (81.95%), Query Frame = 1 
Query:   34 EEKINSERSTKRFKSKTMKNNSFIAPINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWNYLACHPRLWLRVDQSVKDLSKPGVFPDLKTAVSVARPGDTILIAAGGSHPVSNIQIKKQLCLVGGGELPDETTLICSRGSDSALEFLSTCKLANLTVRAELGCCLLHRSGRLTIDGCVLQCETNPLDFLSCPIVSTA-----RSCITSTPMKS------NGDSVTVLHTRIEGGAKAVLTSGDLVLQRVRVIYARTYLYFWFDVDHQ 798
            + K + ER  +    K MK  S +  +NNLDDGCLMH+ SFLSPIPDRYNTALVCHRW YLACHPRLWLRVD+ VKDLS+PGVF ++++AVS ARPGDTILI AGG++ VSNIQIKK LCLVGGGE+PDETTL+C+RGSDSALE LSTCKLANLTV+AELGCCLLHRSGRLTIDGCVLQCETNPLD LSCPIVSTA      + ++   +K         +SVTVL TRIEGGAKAV T GDLVLQRVRV+Y++ YLYFWFDVD++
Sbjct:   10 DNKKHPERIVESKMKKRMKPYS-LTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVMYSKAYLYFWFDVDYE 274
The following BLAST results are available for this feature:
BLAST of FC872254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKIP5_ARATH3.936e-10571.43F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKI... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AD02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872254 ID=FC872254; Name=FC872254; organism=Citrus clementina; type=EST; length=891bp
GGGGGACTTGGAGTTTGTGAACAAATGGAAGATGAAGAGAAGATAAACAG
TGAACGAAGTACTAAACGATTCAAAAGCAAAACTATGAAAAATAATTCTT
TTATTGCTCCAATAAACAATCTTGATGATGGCTGCCTTATGCACGTATTC
AGCTTCTTATCCCCAATTCCAGATCGGTATAACACCGCACTCGTTTGCCA
CAGATGGAATTACTTGGCATGTCATCCTCGCTTGTGGCTGCGGGTAGATC
AGTCTGTTAAGGATCTCTCAAAGCCAGGAGTTTTCCCCGACCTTAAGACA
GCCGTATCTGTGGCAAGACCGGGCGACACCATTTTAATTGCAGCAGGCGG
TAGTCATCCTGTCTCTAATATTCAGATAAAAAAACAACTGTGCCTGGTCG
GAGGAGGTGAGCTTCCTGATGAAACAACCCTTATCTGTTCTCGAGGTTCG
GACAGTGCCTTGGAGTTTCTATCCACGTGCAAGCTGGCGAATTTAACAGT
GAGAGCAGAGCTTGGCTGCTGCTTGCTCCATCGGAGTGGAAGGTTAACTA
TAGATGGGTGTGTACTTCAGTGTGAGACGAATCCACTGGACTTCCTCTCA
TGCCCAATCGTGAGTACAGCTCGTAGCTGTATTACATCTACTCCAATGAA
GAGTAATGGTGATAGTGTTACTGTTTTGCATACTCGAATTGAAGGAGGTG
CCAAGGCTGTTTTGACTAGTGGAGATCTAGTGCTGCAGCGAGTTCGAGTT
ATATATGCCAGGACTTATCTGTATTTCTGGTTCGATGTAGACCATCAATG
AAAACTGTATTCTCATTTTTATGTAACATTTTCCACTGTTTGCAAAGTTA
CTGCTGATTTCTCATTAAAAAAAAAAAAAAAAAAAAAAAAA
back to top