FC872317

Overview
NameFC872317
Unique NameFC872317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.835e-76
Identity = 147/274 (53.65%), Postives = 186/274 (67.88%), Query Frame = 1
Query:    4 GNLVLAEANGTVVWQSNTSNKGVVGFKVLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNVPRPVVYFTFPV-----QFSGLKNVTFNSAPETDEAFAYQLTL----DSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDR------------DSIWETECQLPERCGKFGLCDDNQCVACPTEKG-LLGWSKECAPTLVNFCRIAAFHYYKVEG 759
            GNLVLA +NG V WQ++T+NKGVVG K+LPNGNMVL+DSKG F+WQSFD PTDTLLVGQSL++G VTKLVSR S  ENV+GPYS VME   L LYYK +  P+P+ Y++F +     +   L+NVTF    E D+ FA+ L+L     +S GG  IL R KYN T+SFLRL +DGN++I+TY DKVD    E T+TLF +                 +ECQLP++CG FGLC+++QCV CPT  G +L WSK C P  ++ C    FHY K+ G
Sbjct:  112 GNLVLARSNGQVAWQTSTANKGVVGLKILPNGNMVLYDSKGKFLWQSFDTPTDTLLVGQSLKMGAVTKLVSRASPGENVNGPYSLVMEPKGLHLYYKPTTSPKPIRYYSFSLFTKLNKNESLQNVTFEFENENDQGFAFLLSLKYGTSNSLGGASILNRIKYNTTLSFLRLEIDGNVKIYTYNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSGPVLAWSKTCEPPKLSSCGPKDFHYNKLGG 385          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 85/308 (27.60%), Postives = 128/308 (41.56%), Query Frame = 1
Query:    7 NLVLAEANGTVVWQSNTSN---KGVVGFKVLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNVPRPVVYFTFPVQFSGLKN-VTFNSAPETDEA--FAYQLTLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVAC----------PTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGY 858
            NLVL + +   +W +N +    +  V  ++L NGN VL DS  N    F+WQSFDYPTDTLL    +G  LR G    L S  S  +   G +S+ +++ RL  +Y   +         F V  SG  N V F+  PE  +     Y  T +S       L     N+  S L +   G      Y++++   P+   + +F   S  + +C + + CG +  CD N    C            E GL  WS  C       C    F   K   +        + +  I +++C  RC +DC C  +
Sbjct:  105 NLVLLDHSNKSLWSTNHTRGNERSPVVAELLANGNFVLRDSNKNDRSGFLWQSFDYPTDTLLPEMKLGYDLRTGLNRFLTSWRSSDDPSSGDFSYKLQTRRLPEFYLFKD--------DFLVHRSGPWNGVGFSGMPEDQKLSYMVYNFTQNSEEVAYTFLM--TNNSIYSRLTISSSG------YFERLTWTPSSGMWNVF-WSSPEDFQCDVYKICGAYSYCDVNTSPVCNCIQRFDPSNVQEWGLRAWSGGCRRRTRLSCSGDGFTRMKKMKLPETTMAIVDRS--IGLKECEKRCLSDCNCTAF 393          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 77/314 (24.52%), Postives = 130/314 (41.40%), Query Frame = 1
Query:    4 GNLVLAEANGTVVWQSNTSN-KGVVGFKVLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNVPR-PVVYFTFPVQ--FSGLKNVTFNSAPETDEAFAYQLTLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETE-------CQLPERCGKFGLCDDNQCVACPTEKGLL-----GWSKECAPTLVNFC---RIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCW 888
            GN+VL + +G  VW+++ +N  GV   ++L  GN+V+ DS GN +WQSFD PTDT L  Q   +   T+LV     +     P +++     LS+     +VP+   +Y+  P Q  +   +N  +NS        +  L     + G  ++A          L L  DGNLR+               +++ D D  W          C +   CG  G+C  +    C    G        W++ C   +   C      +  + ++   D + S   +    + +  C + C +DC C G+ Y + T  C+
Sbjct:  109 GNMVLTDYDGAAVWRADGNNFTGVQRARLLDTGNLVIEDSGGNTVWQSFDSPTDTFLPTQ--LITAATRLVPTTQSR----SPGNYIFRFSDLSVLSLIYHVPQVSDIYWPDPDQNLYQDGRN-QYNSTRLGMLTDSGVLASSDFADGQALVASDVGPGVKRRLTLDPDGNLRL---------------YSMNDSDGSWSVSMVAMTQPCNIHGLCGPNGICHYSPTPTCSCPPGYATRNPGNWTEGCMAIVNTTCDRYDKRSMRFVRLPNTDFWGSDQQHLLS-VSLRTCRDICISDCTCKGFQYQEGTGSCY 399          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.027e-15
Identity = 82/310 (26.45%), Postives = 131/310 (42.26%), Query Frame = 1
Query:    1 GGNLVLAEANGTVVWQSNTSN---KGVVGFKVLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNVPRPVVYFTFPVQFSGLKN-VTFNSAPETDEAFAYQL-TLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGL----------LGWSKECAPTLVNFCRIAAF-HYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGY 858
            G NLVL + +   VW +N +    +  V  ++L NGN V+ DS  N    ++WQSFDYPTDTLL    +G +L+ G    L S  S  +   G +S+ +E+  L  +Y S           FP+  SG  N + F+  PE D+  +Y +     ++       R   N+  S L L  +G  +  T+Y      P+   +  F    + + +C     CG +  CD N    C   +G             W+  C       C    F    K++  +  ++  +   G   V++C  RC +DC C  +
Sbjct:  103 GNNLVLLDHSNKPVWWTNLTRGNERSPVVAELLANGNFVMRDSSNNDASEYLWQSFDYPTDTLLPEMKLGYNLKTGLNRFLTSWRSSDDPSSGNFSYKLETQSLPEFYLSRE--------NFPMHRSGPWNGIRFSGIPE-DQKLSYMVYNFIENNEEVAYTFRMTNNSFYSRLTLISEGYFQRLTWY------PSIRIWNRFWSSPV-DPQCDTYIMCGPYAYCDVNTSPVCNCIQGFNPRNIQQWDQRVWAGGCIRRTQLSCSGDGFTRMKKMKLPETTMATVDRSIG---VKECKKRCISDCNCTAF 393          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 82/313 (26.20%), Postives = 127/313 (40.58%), Query Frame = 1
Query:    1 GGNLVLAEANGTVVWQSNTSN---KGVVGFKVLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNVPRPVVYFTFPVQFSGLKN-VTFNSAPETDEA--FAYQLTLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWET---ECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKE----------CAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGY 858
            G NLVL + +   VW +N +    +  V  ++L NGN V+ DS  N    F+WQSFDYPTDTLL    +G  L+ G    L S  S  +   G YS+ +E  RL  +Y SS         +F +  SG  N    +  PE  +     Y  T +S       L     N+  S L +   G      Y++++   P+   + +F     W +   +C +   CG +  CD N    C   +G    +++          C       C    F   K   +        + +  I +++C  RC +DC C  +
Sbjct:  104 GNNLVLLDHSNKSVWSTNVTRGNERSPVVAELLDNGNFVMRDSNSNNASQFLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDYSYKLELRRLPEFYLSSG--------SFRLHRSGPWNGFRISGIPEDQKLSYMVYNFTENSEEAAYTFLM--TNNSFYSRLTISSTG------YFERLTWAPSSVVWNVF-----WSSPNHQCDMYRMCGPYSYCDVNTSPVCNCIQGFRPKNRQQWDLRIPTSGCIRRTRLSCSGDGFTRMKNMKLPETTMAIVHRS--IGLKECEKRCLSDCNCTAF 393          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14
Identity = 86/314 (27.39%), Postives = 144/314 (45.86%), Query Frame = 1
Query:    7 NLVLAEANGTVVWQSNTSNKG--VVGFKVLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTK--LVSRLSIKENVDGPYSFVMESDR-LSLYYKSSNVPRPVVYFTFP---VQFSG---LKNVTF--NSAPETDEAFAYQLTLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLL-----GWS-KECAPTLVNFCRIAAFH---YYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGY 858
            +LVL + + T VW +N +      V  ++L NGN VL DSK N    F+WQSFDYP DTLL    +G++L +G   +  L S  S  +   G +SF++E++  L  +Y   N  +  VY T P   V+F+G   ++N ++  NS  + +E  AY   ++++           +N    F R+   G L++ T+   V   P    F  F  D+     C L + CG +  CD +    C   KG +      W  ++ +   V   +++      + ++  +    +        I +++C  +C  DC C GY
Sbjct:  110 SLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTNDLDRFMWQSFDYPVDTLLPEMKLGRNL-IGSENEKILTSWKSPTDPSSGDFSFILETEGFLHEFYLLKNEFK--VYRTGPWNGVRFNGIPKMQNWSYIDNSFIDNNEEVAYSFQVNNN-----------HNIHTRF-RMSSTGYLQVITWTKTV---PQRNMFWSFPEDT-----CDLYKVCGPYAYCDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSCGEGDGFLRMSQMKLPETSEAVVDKRIGLKECREKCVRDCNCTGY 400          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.363e-14
Identity = 81/309 (26.21%), Postives = 123/309 (39.81%), Query Frame = 1
Query:    1 GGNLVLAEANGTVVWQSNTSNKGV---VGFKVLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNVPRPVVYFTFPVQFSGLKN-VTFNSAPETDEAFAYQL-TLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGL----------LGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGY 858
            G NLVL       VW +N +       V  ++L NGN V+ DS  N    ++WQSFDYPTDTLL    +G  L+ G    L S  S  +   G +S+ +E+  L  +Y    +        FP+  SG  N V F+  PE D+  +Y +     +S       R   N+  S L L  +G      Y+ ++   P+   +  F    + + +C     CG +  C  N    C   +G             W+  C       C    F   K   +        + +  I V++C  RC +DC C  +
Sbjct:  104 GNNLVLLGHTNKSVWSTNLTRGNERLPVVAELLSNGNFVMRDSSNNDASEYLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDFSYKLETRSLPEFYLWHGI--------FPMHRSGPWNGVRFSGIPE-DQKLSYMVYNFTENSEEVAYTFRMTNNSIYSRLTLSSEG------YFQRLTWNPSIGIWNRFWSSPV-DPQCDTYIMCGPYAYCGVNTSPVCNCIQGFNPRNIQQWDQRVWAGGCIRRTRLSCSGDGFTRMKNMKLPETTMAIVDRS--IGVKECEKRCLSDCNCTAF 394          
BLAST of FC872317 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.363e-14
Identity = 85/313 (27.16%), Postives = 142/313 (45.37%), Query Frame = 1
Query:    7 NLVLAEANGTVVWQSNTSNKG--VVGFKVLPNGNMVLHDSK----GNFIWQSFDYPTDTLL----VGQSLRVGGVTK-LVSRLSIKENVDGPYSFVMESDR-LSLYYKSSNVPRPVVYFTFP---VQFSG---LKNVTF--NSAPETDEAFAYQLTLDSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLL-----GWS-KECAPTLVNFCRIAAFH---YYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGY 858
            +LVL + + T VW +N +      V  ++L NGN VL DSK      F+WQSFDYP DTLL    +G++    G  K L S  S  +   G YSF++E++  L  +Y  +N  +  VY T P   V+F+G   ++N ++  NS  + ++  AY   ++++           +N    F R+   G L++ T+   V   P    F  F  D+     C L + CG +  CD +    C   KG +      W  ++ +   V   +++      + ++  +    +        I +++C  +C  DC C GY
Sbjct:  110 SLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTTALDRFMWQSFDYPVDTLLPEMKLGRNRNGSGNEKILTSWKSPTDPSSGDYSFILETEGFLHEFYLLNNEFK--VYRTGPWNGVRFNGIPKMQNWSYIDNSFIDNNKEVAYSFQVNNN-----------HNIHTRF-RMSSTGYLQVITWTKTV---PQRNMFWSFPEDT-----CDLYKVCGPYAYCDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSCGEGDGFLRMSQMKLPETSEAVVDKRIGLKECREKCVRDCNCTGY 400          
The following BLAST results are available for this feature:
BLAST of FC872317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
EP1G_DAUCA8.835e-7653.65Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
SLSG2_BRAOA4.612e-1627.60S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
KPRO_MAIZE4.612e-1624.52Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
SRK6_BRAOE1.027e-1526.45Putative serine/threonine-protein kinase receptor ... [more]
SLSG3_BRAOL2.989e-1526.20S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
SLSG0_BRAOA5.638e-1427.39S-locus-specific glycoprotein OS=Brassica oleracea... [more]
SLSG6_BRAOL7.363e-1426.21S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SLSG1_BRAOA7.363e-1427.16S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DE01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872317 ID=FC872317; Name=FC872317; organism=Citrus clementina; type=EST; length=909bp
GGGGGGAATCTTGTCTTGGCGGAAGCAAATGGCACCGTCGTATGGCAATC
CAACACTTCCAACAAAGGTGTTGTGGGGTTCAAGGTGCTCCCGAATGGAA
ACATGGTGCTTCATGACTCAAAGGGTAACTTTATCTGGCAGAGTTTTGAT
TATCCGACTGATACTCTCTTGGTGGGTCAGTCTCTTCGCGTCGGTGGGGT
CACCAAGCTCGTGAGCAGACTTTCCATTAAAGAAAACGTTGACGGCCCTT
ACAGCTTTGTAATGGAGTCTGATAGATTGTCACTCTATTACAAAAGCAGC
AATGTTCCCCGGCCCGTTGTTTACTTTACTTTCCCTGTCCAGTTTAGTGG
CTTAAAGAATGTAACGTTCAATTCTGCCCCGGAAACTGATGAAGCTTTCG
CTTATCAACTGACTCTAGATTCTTCATCCGGGGGCGGTCTTATTTTGGCA
AGGCCAAAGTACAACGCCACTATATCGTTTCTTCGGCTAGGAGTAGATGG
GAATCTCAGGATCTTTACTTATTACGACAAGGTTGATTCGCAGCCAACGG
AAGAAACATTCACTCTCTTTGATAGAGATTCAATTTGGGAAACTGAGTGT
CAGCTTCCTGAGAGATGTGGTAAATTTGGACTGTGTGATGACAATCAATG
TGTTGCTTGTCCTACAGAGAAGGGCTTGCTTGGCTGGAGTAAAGAGTGTG
CACCGACGCTAGTGAATTTTTGTCGGATAGCGGCTTTCCATTATTATAAA
GTTGAAGGGGTTGATCATTATATTAGCAAATATAATAATGGAACTGGACC
CATCAGAGTTGAAGATTGTGGCAACAGATGTAGCACGGATTGTAGATGTG
TGGGGTATTTTTACCATCAGGAGACATCGAAATGTTGGATTGCTTTTGAC
TTGAAGACT
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