FC872318

Overview
NameFC872318
Unique NameFC872318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872318 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 3.028e-89
Identity = 167/258 (64.73%), Postives = 183/258 (70.93%), Query Frame = 2 
Query:   89 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINELPSLFEVVTGAAKKQVKEXXXXXXXXXXXXXXXXXXQRGSESHTKYSKPM---QPNXXXXXXXXXXXXXXXXTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 853
            ME G A N PRTVEEVFRDFKGRRAGMIKALTTDV+EF++ CDPEKENLCLYG P+E W                  GINFARDGM +KDWLSLVAVHSDAWLLAVAF+FGARFGFDKADRKRLFNM+N+LP++FEVV G AKKQ K+                  +RGSES  K+SKP                       T CGACGE+YA+DEFWICCD+CE WFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:    1 MEAGGAYN-PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKD--KSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 254
The following BLAST results are available for this feature:
BLAST of FC872318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH3.028e-8964.73PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DE02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872318 ID=FC872318; Name=FC872318; organism=Citrus clementina; type=EST; length=894bp
CGCGCCGGGGGGGACTCTGGAAAAATAATAAAAAAAATAGTAATAAAAAT
AATCATAATAAAAAAAAGTAAAATAAAATTTAAAAAAAATGGAAGGAGGA
GTAGCACAGAACAATCCGCGCACAGTAGAGGAGGTGTTTAGAGATTTTAA
GGGACGTAGAGCTGGCATGATCAAGGCTCTCACTACAGATGTTGAAGAGT
TCTACCAGCAGTGTGATCCTGAGAAGGAGAATCTTTGCTTGTATGGCTTC
CCTAGTGAGCAATGGGAAGTAAATTTACCAGCTGAAGAAGTGCCTCCAGA
GCTTCCAGAGCCTGCATTGGGTATCAACTTTGCAAGAGATGGTATGCAAG
ATAAGGATTGGTTGTCTTTGGTTGCTGTCCATAGTGATGCATGGCTGCTG
GCTGTTGCGTTTTATTTTGGTGCCAGGTTCGGATTTGATAAAGCTGACAG
AAAACGGCTTTTTAACATGATAAATGAACTTCCATCGTTATTTGAAGTTG
TAACTGGTGCAGCTAAGAAACAAGTTAAGGAGAAGTCATCAGTCTCAAAT
CATAGTAGCAACAAATCCAAGTCACACTCCAAAGTGCAGCGAGGATCCGA
ATCTCATACAAAGTATTCTAAGCCAATGCAACCAAACGATGAAGATGAGG
GCATGGACGAGGAAGAAGAAGATGAGCATGGTGACACTTTATGCGGGGCT
TGTGGTGAGAACTATGCTTCGGATGAATTCTGGATTTGTTGTGACATCTG
CGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATCACTCCAGCCAGGGCTG
AACATATCAAGCAATACAAGTGCCCTTCTTGCAGCAGCAACAAGAGAGCC
CGCCCTTAACGAACGATGAAATGATGTAGTCTCTTCTGTACTTT
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