FC872321

Overview
NameFC872321
Unique NameFC872321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.557e-67
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 402
            QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP TIKI+Q D
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTD 199          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.327e-63
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 378
            QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D+R E Q
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQ 191          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.762e-48
Identity = 93/128 (72.66%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 387
            QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R+ DT +  +PQ ++
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVVQ 192          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.803e-47
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 357
            QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R+ DT
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT 183          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.823e-46
Identity = 83/115 (72.17%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 348
            QIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VEE F ++A+D+  R+
Sbjct:   65 QIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARM 179          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 82/130 (63.08%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 393
            QIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q   ++
Sbjct:   61 QIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.270e-41
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 402
            QIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.270e-41
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 402
            QIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.270e-41
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 402
            QIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.271e-41
Identity = 79/115 (68.70%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 348
            QIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
The following BLAST results are available for this feature:
BLAST of FC872321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA3_ARATH1.557e-6795.49Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU2.327e-6396.00Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI2.762e-4872.66Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI6.803e-4776.27Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA9.823e-4672.17GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO2.958e-4263.08GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA3.270e-4162.04Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN3.270e-4162.04Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA3.270e-4162.04Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_RAT4.271e-4168.70Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872321 ID=FC872321; Name=FC872321; organism=Citrus clementina; type=EST; length=788bp
GGGCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAAC
CGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCG
ACGAGTCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAG
CATGCATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACAT
GGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTG
ATGAATATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAAT
GTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGC
AGATACAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTG
ACCAGGCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGT
TCTTAAGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAAT
CATTTTGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTA
TTGTTCTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAG
ATCATCTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTT
TTGTTCCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCG
ATACTGAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATGCGCTTGACG
GCTTTGCAATGGTGATATGAGAAAGGCCTTGAACATTT
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