FC872326

Overview
NameFC872326
Unique NameFC872326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872326 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  178 PFRFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDY 486
            PF F ++I  S +++K+L++P  FV +F  +ELS    L  P+G VW+VG+ K   KIW  DGW  FV  +SI + Y L+F+Y  NS F V IF+++  EI+Y
Sbjct:    4 PF-FHKLIFSSTIQEKRLRVPDKFVSKFK-DELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104          
BLAST of FC872326 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.175e-16
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  184 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYHRGQPNKEEQNSIH----DDEMQCENSTKKLGFRASCKNQMHHSQGSLHYK 633
            +FF+++LPS ++ K +KIP  FV   G  +LS   TL+TP G    + + +   +IW  +GW  F + HSI   +FL+F+Y +NS+F V+IF+++ACE  YP           +++H    DD++      + +G + + KN    + G   +K
Sbjct:   29 KFFKLVLPSTMKDKMMKIPPRFVKLQG-SKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL----------DAVHIIDSDDDIIDITGKEFVGTQGTRKNNQSVNGGDTEHK 171          
BLAST of FC872326 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.617e-16
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  184 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYP 489
            +FF+++LPS ++ K ++IP  FV   G  +LS   TL TP G    + + +   +IW  +GW  F + HSI   +FL+F+Y KNS+F V+IF+ +ACE +YP
Sbjct:   29 KFFKLVLPSTMKDKMMRIPPRFVKLQG-SKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129          
BLAST of FC872326 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  184 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYHRGQPNKEEQNSIHDDEMQ 549
            +F ++IL S + +K +K+P  FV RFG  +L+ + TL+TP G    + + +   ++W + GW  F + HS+   +FL F Y  +S F V+IFD++A EI+YP      N+EE   + DD+ Q
Sbjct:   33 KFIKIILLSRIIEKMMKVPARFV-RFG-PKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREE---VMDDDEQ 149          
BLAST of FC872326 vs. ExPASy Swiss-Prot
Match: Y3123_ORYSJ (B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica GN=Os03g0212300 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 44/118 (37.29%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  151 KMAGNRATEPFRFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGC-VWQVGVTKD--KGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYH 495
            +MA  R T+ F FFR+ILP    + KLK+P  F    G  EL          G   W V V  D   G ++L  GW  F + H +   +FLVF+Y   + F V +FD T C  DY  H
Sbjct:    4 QMANLRLTD-FEFFRIILPGS-SKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAFTVTVFDETMCRRDYRRH 119          
The following BLAST results are available for this feature:
BLAST of FC872326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VRN1_ARATH1.255e-1843.69B3 domain-containing transcription factor VRN1 OS=... [more]
Y3896_ARATH1.175e-1632.47B3 domain-containing protein At3g18960 OS=Arabidop... [more]
Y4158_ARATH2.617e-1641.18B3 domain-containing protein At4g01580 OS=Arabidop... [more]
Y1475_ARATH1.299e-1536.89B3 domain-containing protein At1g49475 OS=Arabidop... [more]
Y3123_ORYSJ5.647e-1137.29B3 domain-containing protein Os03g0212300 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DE11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872326 ID=FC872326; Name=FC872326; organism=Citrus clementina; type=EST; length=893bp
GGGGGAAAAAAGACAGAGGGTCACGTCACATGTCATGGCAGCATGAACAG
AGTTTCTGAATGTTAGACTTGAACAGTTGAATATATCACGGCAAAAAGCA
AAATGAGCAAAAGACATGTGGGATTTTCTCGCCGTTGTATGGTGATGAAG
AAAATGGCTGGCAACAGAGCAACGGAACCCTTTCGTTTCTTCAGAGTCAT
TCTTCCGAGCATCCTTGAACAGAAGAAGCTGAAAATCCCGAAAGCGTTTG
TCGGGAGATTTGGGTATGAAGAACTTTCCTCTGATGCTACTCTCAAGACT
CCGAACGGATGTGTTTGGCAAGTGGGGGTGACAAAAGACAAGGGAAAGAT
TTGGCTCGATGATGGATGGCATCATTTTGTCAAAGATCATTCTATTTGTG
TTGCATATTTTTTGGTATTCAAATATGCCAAGAATTCAACCTTTGATGTT
CTTATTTTTGATATGACTGCTTGCGAGATTGACTATCCTTATCATCGCGG
ACAACCAAACAAGGAGGAGCAGAATTCAATCCATGACGACGAAATGCAAT
GTGAAAACTCAACTAAGAAACTAGGTTTCAGAGCTTCATGCAAAAATCAA
ATGCACCATTCACAAGGATCTTTGCACTACAAAAGGCTGTTGAATGGAAC
TGCTGGGAATTTTAGTCGTCCAAGCTCAGCAGTTCAAGATGATCACCAAA
CAGAATTTGTAGACGGACAAGCATTGTCGGCTTTGCTTGAAGAAATGGGG
ATCTCTATCAGTCGATCATGTCTGTCTCTTGAAGCGGAAGAAAGACACAG
AGTAATCACTGCAGCCAGATTGTTCGAGCCTANGAATCCTTCATTCATGG
TTATTGTGCGGGGAAATGAAAGACGTAAAGCCTATCTGTTTAT
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