FC872329

Overview
NameFC872329
Unique NameFC872329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   52 PKKAESNKKRPVESASKTHVPDKKAKFVTP--QKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 342
            PKK E+ KKR  E+A KT + DKKAK  TP  QKT  +KG +H+ATPHP+K   KT AN+D+  ++  KSG S PCKSC+++F +E  LQ+H+KAKHGA
Sbjct:  206 PKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302          
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.038e-22
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   52 PKKAESNKKRPVESASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 342
            PKKAE  K+R  +SA+KT V DKKAK  TPQKT+ +KG  H+ATPHPSK+++KT            KS  S  CK CNRSF +EG L SH+KAKH A
Sbjct:  182 PKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKT-----------PKSAGSHHCKPCNRSFGSEGALDSHSKAKHSA 267          
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   52 PKKAESNKKRPVE-SASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSD----QTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGAPA 348
            PKK E  KKR  E ++SK    +KKAKFVTPQKT+ +K   H+ATPHPSK++ K            +QQ  KS  +F CKSC R+FT+E GLQSHTKAKH A A
Sbjct:  191 PKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAAA 294          
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.340e-21
Identity = 52/95 (54.74%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   55 KKAESNKKRPVESASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHG 339
            KK +  KKRP ESA+KT +  KKAK  TP+KT+ +K V H+ATPHPSKK  KT    + TK Q   S     C SC +SFT E GLQ H KAKHG
Sbjct:  203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKT---PNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHG 293          
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-19
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   52 PKKAESNKKRPVESAS-KTHVPDKKAKFVTP--QKTEERKGVS-HIATPHPSKKSAKTLANSDQTKQQPR---KSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 342
            PKK E  KKRP ES+  KT + DKKAK  TP  QKT  +KG + H+ATPHP+K   KT+ N+D++ + P+   KSG S PCK C++SF +E  LQ+H++AK GA
Sbjct:  200 PKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301          
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   52 PKKAESNKKRPVESAS-KTHVPDKKAKFVTP--QKTEERKGVS-HIATPHPSKKSAKTLANSDQTKQQPRKSGSS-FPCKSCNRSFTTEGGLQSHTKAKHG 339
            PKK E  KKR  ES+  KT + DKKAK  TP  QKT  +KG + H+ATPHP+K   KT+ N+D++ + P+ +  S  PCKSC++SF +E   Q+H+KAKHG
Sbjct:  200 PKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETAPQAHSKAKHG 298          
BLAST of FC872329 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   52 PKKAES-NKKRPVESASKTHVPDKKAKFV-----TPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSS 264
            PKK E  NKKRP ES SKT V  KKAK       TPQKTEE+K   H ATPHP+KK  K+  N++Q+   P+  G S
Sbjct:  200 PKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQS---PKSGGQS 273          
The following BLAST results are available for this feature:
BLAST of FC872329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HDT2_MAIZE9.392e-2455.56Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT1_SOLCH1.038e-2255.67Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT3_ARATH1.356e-2253.85Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN3.340e-2154.74Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE1.075e-1951.92Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_MAIZE5.896e-1850.50Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT2_ARATH3.134e-1153.25Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872329 ID=FC872329; Name=FC872329; organism=Citrus clementina; type=EST; length=555bp
GGGGATGAAGGCACTGATGAGAGCGAAAGTGGTGATGAAGATGAGGAGAC
CCCAAAGAAGGCTGAATCAAACAAGAAGAGACCTGTGGAGTCTGCTTCAA
AAACCCATGTTCCTGACAAGAAGGCTAAATTTGTCACACCTCAAAAGACA
GAGGAGAGGAAAGGGGTCAGTCACATTGCGACTCCACACCCCTCAAAGAA
GTCTGCTAAGACTCTTGCTAACAGTGACCAGACAAAGCAGCAGCCTCGTA
AATCAGGCAGTTCATTTCCCTGCAAATCATGCAATAGGTCATTTACCACT
GAAGGTGGTTTGCAATCTCATACAAAAGCCAAGCATGGTGCTCCAGCATG
AAAGATGGCGTTGAAACGGCTTTTTGTGCTTTGGTTACCTTACTGCTTCT
CAGGGAGGAATTTCAGGGAAAAAAAAAATATGGAAATGGATAGTTTAATG
TAGGACAGCAATCTATTATGTGACAATCGAATATCGACTTCGTGGTTCTA
TGGAGTCTAATAGTAAGATTTGTTCCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
back to top