FC872333

Overview
NameFC872333
Unique NameFC872333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872333 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 87/108 (80.56%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    5 EYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 328
            +YVP+D++SIS FEPPQSPE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+  +IP PL RPQHV+LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct:  182 DYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289          
BLAST of FC872333 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 2
Query:    8 YVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 328
            +VP++ ESI  FE P SP+ SY      AED+AKEP  VPP L +TLL       E     ++PQHVVLNH+++++G +  S+VALG THRF +KY+TVVLYK + R
Sbjct:  181 FVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGTT----EETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283          
BLAST of FC872333 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 2
Query:   20 DLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 316
            D+  +SS  P    +  Y +     E+  K PP++PPHL   +LN        P  L  P HV+LNHLY    K G  V+ L +THR+  KYVT +LYK
Sbjct:  175 DVSELSSSPPGPYHQEPYMS---KPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268          
The following BLAST results are available for this feature:
BLAST of FC872333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KINB2_ARATH9.473e-4780.56SNF1-related protein kinase regulatory subunit bet... [more]
KINB1_ARATH3.625e-2250.47SNF1-related protein kinase regulatory subunit bet... [more]
AAKB1_MOUSE8.376e-1139.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1AH06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872333 ID=FC872333; Name=FC872333; organism=Citrus clementina; type=EST; length=697bp
GGGGGAATATGTTCCAGATGACCTTGAAAGCATATCTAGTTTTGAGCCTC
CTCAGTCTCCAGAGACGAGCTACAACAACTTGCAACTGACTGCTGAGGAT
TTTGCAAAGGAACCGCCATTGGTTCCTCCACACCTTCAAATGACACTGCT
CAATGTGCCTGCATCATACATGGAAATTCCTCCTCCTTTGTCAAGACCTC
AACATGTGGTCCTTAACCATCTCTATATGCAAAAAGGGAAAAGTGGCCCG
TCTGTGGTGGCACTTGGTTCAACACATCGATTTTTAGCCAAATATGTGAC
GGTGGTGCTCTATAAGTCTATGCAGAGGTGATAGTATACTATACCTACGA
TGACTTTATAGTCTTCAATCCCTATATGTAGTTAATATAATTATGGAGAG
GTAGGTGCTATGAGAATGGATAAAGTAGCAAGGAACTTAAAAAGTAATGC
AAATATTTGATGGCCATGATCCAACAATTTCTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACTTTGCGGCCCCCCCCCCCCAATTCA
ATTTAAAACCCAAAAAATTTAAGCCTGGGGCCCAAATTAAGACCCCTTTG
GCCAATTTCCCCTAAAAGGAATCCAAAAAAAATTACCGGGCCCCTTT
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