FC872341

Overview
NameFC872341
Unique NameFC872341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9924 contig Ccv1_Contig9924:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872341 vs. ExPASy Swiss-Prot
Match: ULP1_YEAST (Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae GN=ULP1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 47/172 (27.33%), Postives = 84/172 (48.84%), Query Frame = 2 
Query:   89 ITRSSMRSLLPRAWIDGDIITMYAEYKTIEEAQKDITSPRCWFLPSYYSQVVLGDSGDLNPYRRASRFQERYMPQLETCEKIYVPIHC-EAHWYMLVIDILRQTADIWDSLESLSQREKMINQSLTILASLDFLLLGEARLRFGSNFNFLHFQLGRQTGLPQQPNDFDCGYY 601
            IT    ++L PR W++  II  + +Y  IE++  +  +   +F  +      L + G    Y+   R+ +R   Q++  +KI+ PI+  ++HW + +ID+ ++T    DSL +          S  IL  L   ++ E++   G +F+ +H         PQQPN +DCG Y
Sbjct:  435 ITVRDFKTLAPRRWLNDTIIEFFMKY--IEKSTPNTVAFNSFFYTN------LSERG----YQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA-----MSFAILTDLQKYVMEESKHTIGEDFDLIHLDC------PQQPNGYDCGIY 583
The following BLAST results are available for this feature:
BLAST of FC872341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ULP1_YEAST2.067e-1127.33Ubiquitin-like-specific protease 1 OS=Saccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DF02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872341 ID=FC872341; Name=FC872341; organism=Citrus clementina; type=EST; length=787bp
GGGCGAGGATGAAAAAAAGCTTATTCTTTACCTTTTTGACGACAAGTTGG
CTGAAATGGATGTTGTCGTCCGTACAGAATACAGCAGCATAACACGGAGC
AGTATGCGTTCCCTCCTGCCGAGAGCATGGATTGATGGTGATATTATTAC
TATGTACGCAGAGTACAAGACTATCGAAGAGGCCCAAAAGGATATCACCT
CTCCTCGATGTTGGTTCTTGCCGTCATATTATTCCCAAGTTGTATTGGGT
GACTCGGGTGATCTAAACCCCTATCGTCGAGCTTCTAGGTTCCAAGAGCG
CTACATGCCCCAGCTGGAAACCTGTGAAAAGATTTATGTGCCCATACATT
GTGAAGCTCATTGGTACATGCTTGTTATTGACATTCTTCGTCAAACTGCT
GATATTTGGGATTCATTGGAATCTCTCAGTCAAAGGGAAAAAATGATTAA
TCAGTCATTGACAATTCTCGCCTCACTGGATTTTTTGCTACTTGGAGAGG
CTCGACTTCGTTTTGGTTCAAATTTCAATTTTCTGCATTTTCAACTTGGT
CGTCAAACTGGTCTGCCACAACAGCCAAATGATTTTGATTGTGGATACTA
TACCTTGAAATATATGGACAATCCCTCTATTGTTGCTGACCAGTCTTATC
AGCACGATTCGGATTATGCTCGCATCCTGTTGGCACTCTATCTAGCACAA
TCTCCACTTAATCATATTAGGCATAAACTCATGCAAGATGCTTCCAATGG
ATATGGAAAGTGTAGTGCTGCTGACTNCGCAAGGGCC
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