FC872380

Overview
NameFC872380
Unique NameFC872380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 54/121 (44.63%), Postives = 83/121 (68.60%), Query Frame = 2
Query:   41 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 403
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE++   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   41 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 403
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_CANFA (Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   41 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 403
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   41 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKA 397
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   35 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQ 376
            +++Q E+E+  N    LQK   K  + R     QL EN+ VL EL LL     VYKL GPVLVKQ+L E+  NV KRIEYIS ELK     L+++E+     +E++ K QQ+ Q
Sbjct:   10 KKMQAEIESYQN----LQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQQQCQ 119          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_CAEEL (Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 2
Query:   50 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 403
            + E + N L  L+KD  K    R++  ++L E++ V  EL L+   + VYKLIG VLV+QDL EA + V KR+E+I +E KR++A++ D+ +K   +++ +  +Q+  Q +    A+A
Sbjct:    6 KFEEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQKSFQMMAQAAAQA 123          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_CAEBR (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 40/111 (36.04%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   50 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSL 382
            + E + + L  L+KD  K    R++  ++L E++ V  EL L++  + VYKL+GPVLV+QDL EA + V KR+E+I +E+KR++A++ D+ +K   +++ +  +Q+  Q +
Sbjct:    6 KFEEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQKAFQMM 116          
BLAST of FC872380 vs. ExPASy Swiss-Prot
Match: PFD6_DICDI (Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 2
Query:   32 LRELQRELETKANDLSKLQK-DIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQA 388
            ++++Q +L  KA D  ++ + ++ K    R K   QL ENE+V KE  LL   A +YKL GPVL KQ   EA   +  R++ I+  LK ++   +D+E+K   ++  IF+ Q +I+SL A
Sbjct:   15 IQQIQDQL-IKARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAKIYKLNGPVLFKQTKEEAENTITSRLDIINNNLKTIETNFKDIEKKAMEQRNKIFEYQNKIRSLTA 133          
The following BLAST results are available for this feature:
BLAST of FC872380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFD6_BOVIN7.304e-2344.63Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV... [more]
PFD6_HUMAN1.246e-2244.63Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 ... [more]
PFD6_CANFA1.246e-2244.63Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 P... [more]
PFD6_MOUSE2.125e-2244.54Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 ... [more]
PFD6_DROME5.070e-1644.74Probable prefoldin subunit 6 OS=Drosophila melanog... [more]
PFD6_CAEEL5.070e-1636.44Probable prefoldin subunit 6 OS=Caenorhabditis ele... [more]
PFD6_CAEBR1.129e-1536.04Probable prefoldin subunit 6 OS=Caenorhabditis bri... [more]
PFD6_DICDI1.381e-1336.67Probable prefoldin subunit 6 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872380 ID=FC872380; Name=FC872380; organism=Citrus clementina; type=EST; length=699bp
GGGGGCAGCAGCAATGGGATCGGCCGCAGCTCTTCGAGAGCTTCAACGTG
AACTCGAAACCAAAGCTAACGATCTCAGCAAACTCCAAAAAGATATTGGT
AAAAATCATCAAGTGAGAAAGAAGTACACTATTCAGCTTGGAGAAAACGA
GCTCGTCCTTAAGGAGTTGGGTTTGTTAAATGAAGGAGCAAATGTCTATA
AATTGATTGGTCCAGTTCTTGTGAAGCAAGATTTGGCAGAGGCTAATGCC
AATGTGCGCAAGAGAATTGAATACATCTCTGCTGAGTTGAAGCGACTTGA
TGCAACTCTTCAGGATTTGGAAGAAAAACAAAATAGCAAAAAGGAGGCGA
TCTTCAAAGTACAACAGAGGATACAATCACTTCAGGCAGGAAAAGCTAAG
GCCTAATTAACTTTGTAGGAGTGTTCGCTTTGCCCACAGCTCTGTTTCTG
TTTTGCCTCAAGTGCGACTTGGTGTTCTTTACTGTTAATTTTTGAGGCTA
TATAGTTGTGCGTTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAGAAGGAAAAAAAAA
AAAAAACAAAAAAAAACGTTGGGGGGGCCCCCGCGCCCTGTCAATTTAA
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