FC872411
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2) HSP 1 Score: 379.022 bits (972), Expect = 1.745e-104 Identity = 178/201 (88.56%), Postives = 191/201 (95.02%), Query Frame = 1 Query: 226 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS AVT+L EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTAAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESKLR SHM+H YDFYKPNLASEY Sbjct: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLRASHMAHVYDFYKPNLASEY 201
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_CHICK (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 2.080e-73 Identity = 131/199 (65.83%), Postives = 157/199 (78.89%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FCS+ ED+ S+ LT V L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYGGTAALFN +NW+ESSSWDGRY LVV D AVYA G ARPTGGA AV MLVG +AP+ FE LRG+HM HAYDFYKP++ SEY Sbjct: 15 KDVGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYATGNARPTGGAGAVAMLVGSNAPLIFERGLRGTHMQHAYDFYKPDMVSEY 213
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 4.634e-73 Identity = 129/199 (64.82%), Postives = 159/199 (79.90%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K+VGI+A++IYFP V Q LE +DG + GKYTIGLGQ M FC++ ED+ S+ +T V NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LRG+HM HAYDFYKP++ SEY Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEY 213
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2) HSP 1 Score: 274.248 bits (700), Expect = 6.053e-73 Identity = 129/199 (64.82%), Postives = 158/199 (79.40%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V NL+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LRG+HM HAYDFYKP++ SEY Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEY 213
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_CRIGR (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Cricetulus griseus GN=HMGCS1 PE=3 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 3.004e-72 Identity = 127/199 (63.82%), Postives = 158/199 (79.40%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V NL+E+ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+AP+ F+ LRG+HM HAYDFYKP++ SEY Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQNLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDRGLRGTHMQHAYDFYKPDMLSEY 213
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_MOUSE (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 3.923e-72 Identity = 127/199 (63.82%), Postives = 158/199 (79.40%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V L+E++ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNWVESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+AP+ F+ LRG+HM HAYDFYKP++ SEY Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWVESSSWDGRYALVVAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDRGLRGTHMQHAYDFYKPDMLSEY 213
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_RAT (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 5.124e-72 Identity = 127/199 (63.82%), Postives = 157/199 (78.89%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ LT V L+E+ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV D A+YA G ARPTGG AV +L+GP+APV F+ LRG+HM HAYDFYKP++ SEY Sbjct: 15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAIYASGNARPTGGVGAVALLIGPNAPVIFDRGLRGTHMQHAYDFYKPDMLSEY 213
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 6.692e-72 Identity = 125/202 (61.88%), Postives = 156/202 (77.23%), Query Frame = 1 Query: 223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 T +N+GI +++YFP T V QE LE DG S+GKYT+GLGQ MAFC + ED+ S+SL AV NL++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K GNT I+G+D+ NACYGGT+AL N + W+ESS WDGR +VV D AVY +GPARPTGGA V ML+GP+AP+ FES LRG HM + YDFYKP++ SEY Sbjct: 2 TKPENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAVNNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTSALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGLRGVHMENVYDFYKPDMDSEY 203
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 4.338e-71 Identity = 129/218 (59.17%), Postives = 161/218 (73.85%), Query Frame = 1 Query: 175 HIFFIWAFSVFENQIKTMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 H F A +V + T K+VGILA+++YFP V Q LE ++ GKYT+GLGQ M FCS ED+ S+ LT V L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA+LFN NW+ESSSWDGRY +VVC D AVY G ARPTGGA AV ML+GP AP+A E LRG+HM + YDFYKPNLASEY Sbjct: 33 HQRFSTASAVPLAKTDTWPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEY 250
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2) HSP 1 Score: 266.159 bits (679), Expect = 1.648e-70 Identity = 126/202 (62.38%), Postives = 153/202 (75.74%), Query Frame = 1 Query: 223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 T K+VGILA+++YFP V Q LE + GKYT+GLGQ M FCS ED+ S+ LT V L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA+LFN NW+ESS WDGRY LVVC D AVY G ARPTGGA AV ML+GP AP+ E LRG+HM +AYDFYKPNLASEY Sbjct: 49 TWPKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEY 250 The following BLAST results are available for this feature:
BLAST of FC872411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872411 ID=FC872411; Name=FC872411; organism=Citrus clementina; type=EST; length=830bpback to top |