FC872414

Overview
NameFC872414
Unique NameFC872414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872414 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.964e-20
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    5 KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 145
            KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQ
Sbjct:  146 KGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQ 192          

HSP 2 Score: 50.8322 bits (120), Expect = 1.964e-20
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 3
Query:  144 RIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 290
            +IF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  192 QIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of FC872414 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.964e-20
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    5 KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 145
            KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQ
Sbjct:  146 KGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQ 192          

HSP 2 Score: 50.8322 bits (120), Expect = 1.964e-20
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 3
Query:  144 RIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 290
            +IF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  192 QIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of FC872414 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.210e-15
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 2
Query:    5 KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 145
            K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER Q
Sbjct:  145 KADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQ 191          

HSP 2 Score: 46.9802 bits (110), Expect = 1.210e-15
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 3
Query:  144 RIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 287
            +I+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:  191 QIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238          
BLAST of FC872414 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.806e-14
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 2
Query:   35 AFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 145
            A D LE  L KFDDGPFFLGQFS  D+AY+  +ER Q
Sbjct:  155 ALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQ 191          

HSP 2 Score: 46.595 bits (109), Expect = 2.806e-14
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 3
Query:  129 LLRDSRIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 287
            +L   +I+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:  186 ILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238          
The following BLAST results are available for this feature:
BLAST of FC872414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ1.964e-2068.09Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI1.964e-2068.09Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ1.210e-1557.45Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE2.806e-1464.86Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AA06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872414 ID=FC872414; Name=FC872414; organism=Citrus clementina; type=EST; length=667bp
GGGCAAAGGAGACCCAGCAAAACAAGCTGGTCCTGCTTTTGATTACTTAG
AGAAGGCCCTTGATAAATTTGATGATGGCCCGTTCTTCCTTGGACAGTTC
AGTCAGGTGGACATAGCCTATATTCCATTTGTTGAGAGATTCCAGAATCT
TCTTATCAGAAGAATTTAAGTATGACATCACTGCAGGCAGGCCTAAACTG
GCAGCATGGATTGAGGAGTTGAACAAGCTCGATGCTTACAAGTCAACAAA
AGCAGATCCAAAAGAACTCGTTGAATTTTACAGGAGCCGCTTCGTGGCCA
AGCAGTGAACCTGCAATCAGTCGTCTTAGAAGCGCACTGAATCAGTTGGT
GGCGTGGTTTGTAAAATCTCGTATAATAAAGCTGCGCGTTATACGCATTA
CATATTGTTTGCCGATGTGAGCTTGTGTACGTTGCTGGATATTGAATGAG
TTGATGACTTGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGGGGGCCCCCCCCGCC
CCATCAAATTTAAAACCCAAAAAGCTTTAGGGGGGGGGCCCAATTTGGGG
CCCATTGGCCAATTTCC
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