FC872536

Overview
NameFC872536
Unique NameFC872536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14436 contig Ccv1_Contig14436:17..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872536 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.699e-68
Identity = 116/188 (61.70%), Postives = 154/188 (81.91%), Query Frame = 1 
Query:  157 VIGPQYCLPYPVDLSIVRKFLTLTDGSFAVTDINDNLMFKVKEKLISLHDKRTLLDPAGNPIVTITEKVFSLHEKHFVFRGASTDTKDLLFTVERSSVIQLKTTLNVYLASNTKQDVCDFKIKGSWTEKSCVVYAGESNTIVAQMHKKTTAGSVLLNKDRFTVTVYPNIDYAFIVALIVILDDINGDD 720
            V+ P+YC PYP+D++IVRK ++LTDG+F +TD+N NL+FKVKE +  LHDKR LLD +G P+VT+ EK+ S+H++  VFRG STD +DLL+TV+RSS++QLKT L+V+L  N  +  CDF++KGSW E+SCVVYAGES+ IVAQMH+K T  SV L KD F+VTVYPN+DYAFI +L+VILDD+N +D
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
The following BLAST results are available for this feature:
BLAST of FC872536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH3.699e-6861.70UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872536 ID=FC872536; Name=FC872536; organism=Citrus clementina; type=EST; length=872bp
CGGGCCGGGGGCTCGTATCATATCATGGAGCAACCAATTACACAACACAC
TGCAGACCAGATGCCACAGCAACCAAACCCACAGCAAATTCCACAGCAGC
CAATTAATATTCCAGCGCCAACTCCAGCACCAACAATATATTCCAATCCG
GTTTCGGTAATCGGCCCTCAGTATTGCCTTCCTTATCCCGTTGATCTATC
CATCGTTAGAAAGTTTTTAACCCTCACCGATGGCAGTTTTGCTGTCACTG
ATATCAATGACAATCTCATGTTCAAAGTGAAAGAAAAACTTATAAGCCTC
CATGACAAGCGGACTCTACTTGATCCTGCTGGCAACCCTATTGTCACCAT
AACAGAGAAAGTTTTTTCCTTGCACGAGAAGCATTTTGTATTCAGGGGGG
CTAGCACAGACACTAAAGATCTTCTCTTTACTGTGGAAAGATCTTCAGTG
ATCCAATTGAAGACCACTTTGAACGTCTACCTGGCAAGTAACACCAAACA
AGATGTTTGCGATTTCAAGATCAAAGGCAGCTGGACTGAAAAATCTTGTG
TTGTATATGCTGGAGAGTCAAACACAATTGTTGCCCAGATGCACAAAAAG
ACAACTGCGGGCAGTGTCTTGCTCAACAAGGACAGGTTCACTGTGACAGT
TTATCCGAACATAGACTATGCGTTTATAGTAGCCCTGATCGTGATCCTCG
ATGATATCAACGGTGATGATGATACGAGTGAGATAATTTAGATTTGAAAT
TGCTACTATAAAGTGAAAAATAGTGTGTCTGTTTGATGTAATTCAAGTAA
GATGCTGTATCTGTGGCTTTGGTTTTCCTTGATTTCAAAACCCTTTGCAG
TAGCCAGCTAGTTAAAAGTACT
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