FC872540

Overview
NameFC872540
Unique NameFC872540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1036 contig Ccv1_Contig1036:318..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872540 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.751e-39
Identity = 80/129 (62.02%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   13 KLLNQKIKQKTGYNPSFVDHERFEHDSPFRSLGQPNGTPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGR 399
            +LLN +I++ +    SF D +R+EH SPFRSLGQP    +DLEG S MQ EEN HLQR +PF+ P  +GW G+PG+P  P+VK+ I LDVPVDKYP+ +NFVGRILGPRGNSLKRV   T C VFIRGR
Sbjct:   68 RLLNHEIRRVS----SFPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPS-YNFVGRILGPRGNSLKRVELATHCRVFIRGR 191          
BLAST of FC872540 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.016e-21
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   13 KLLNQKIKQKTGYNPSFVDHERFEHDSPFRSLGQPNGTPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGR 399
            +L+NQ+I + T    + +   RF+H SP  S G    +  D+ G ++    E           + P+  W   PG  +  +VKR I +D+PVDKYPN +NFVGR+LGPRGNSLKRV A T+C V IRGR
Sbjct:   84 RLMNQEILRVTTLLENALSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERS-------VSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPN-YNFVGRLLGPRGNSLKRVEASTDCRVLIRGR 204          
BLAST of FC872540 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.340e-20
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   10 TKLLNQKIKQKTGY--NPSFVDHERFEHDSPFRSLGQPNGTPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGR 399
            ++LLNQ++ + +G   N  F D +R  H SP         + +   GL       NG  Q         +M WQG PG P++  VKR + L++PVD YPN FNFVGR+LGPRGNSLKRV A T C VFIRG+
Sbjct:   54 SRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGW----NGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPN-FNFVGRLLGPRGNSLKRVEATTGCRVFIRGK 180          
BLAST of FC872540 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.750e-20
Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   10 TKLLNQKIKQKTGYNPS--FVDHERFEHDSPFRSLGQPN----GTPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGR 399
            ++LLNQ+I + TG  P+  F D +R  H SP   +  PN     +   L G + +  E  G    MA       M WQG P  P++  VKR + LD+PVD YPN FNFVGR+LGPRGNSLKRV A T C V+IRG+
Sbjct:   53 SRLLNQEIFRITGMMPNQGFTDFDRLRHRSP-SPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMA-------MEWQGAPASPSSYPVKRILRLDLPVDTYPN-FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179          
BLAST of FC872540 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.638e-18
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   13 KLLNQKIKQKTGY--NPSFVDHERFEHDSPFRSLGQPNGTPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGR 399
            +LLNQ+I + T    N + +     +H SP  S G       D+ G ++    E     R  P  + P   W   PG  +  + KR I +D+PVD YPN FNFVGR+LGPRGNSLKRV A T+C V IRGR
Sbjct:   88 RLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGIFQNARADMNGWASQFPSE-----RSVP--SSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPN-FNFVGRLLGPRGNSLKRVEASTDCRVLIRGR 210          
The following BLAST results are available for this feature:
BLAST of FC872540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
QKIL5_ARATH3.751e-3962.02KH domain-containing protein At1g09660 OS=Arabidop... [more]
QKIL1_ARATH6.016e-2142.64KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL3_ARATH1.340e-2044.70KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL4_ARATH1.750e-2046.32KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL2_ARATH1.638e-1842.75KH domain-containing protein At5g56140 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CB11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872540 ID=FC872540; Name=FC872540; organism=Citrus clementina; type=EST; length=401bp
ACAAAGCAAACAAAGCTTCTCAATCAAAAAATCAAACAAAAAACGGGTTA
CAATCCAAGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTA
GGTCATTAGGTCAGCCAAATGGAACACCAATGGATTTGGAGGGTTTGTCT
GCAATGCAAACTGAGGAAAATGGGCACCTTCAAAGAATGGCCCCTTTTCA
AACTCCTCCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACAC
CTGTTGTAAAGAGAAAAATTACACTTGATGTTCCTGTGGATAAATATCCA
AATCAGTTTAATTTTGTCGGACGGATTTTGGGACCGCGTGGGAACTCGCT
CAAAAGAGTCTAAGCCATGACAGAATGTATGGTGTTCATTAGAGGCCGGG
G
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