FC872563

Overview
NameFC872563
Unique NameFC872563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9990 contig Ccv1_Contig9990:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_ARATH (Mitochondrial import inner membrane translocase subunit Tim9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1
Query:   40 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 318
            MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSLVERCF DCVD+FTRK+LQKQEETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct:    1 MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 1
Query:   40 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 318
            MDK+ML  LDGLPE+DK RMAAM+D LQ+RDSLRMYNSLVERCF DCVD F RKTL KQEE+CV RCAEKFLKHSMRVGMRFAELN   AT +
Sbjct:    1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1
Query:   40 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 318
            MDKNML  LD LPE+DK +MA+MI+ LQ+RDSLRMYN+LVERCF DCVD+F RKTL KQEETCV RCAEKFLKHSMRVG+RFAELN  AAT +
Sbjct:    1 MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_ZYGBA (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 39/79 (49.37%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   64 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 300
            +D L  +++   + +I+H Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+ RC+EKFLKHS RVG+RF E N+
Sbjct:    1 MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCSEKFLKHSERVGLRFQEQNA 79          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_ASHGO (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   64 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 300
            +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+TC+MRC+EKFLKHS RVG RF E N+
Sbjct:    1 MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_YEAST (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae GN=TIM9 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   64 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 300
            +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+C+EKFLKHS RVG RF E N+
Sbjct:    1 MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_YARLI (Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica GN=TIM9 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   64 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 300
            +D L  +++     +++  Q++D +R+Y+SLV+RCF DCV++FT K L  +EE+C+ +C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNNREQQEFQQLVEQKQMKDFMRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_KLULA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis GN=TIM9 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   64 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 300
            +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+ C+MRC+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNGKEQQEFQKIVEQKQMKDFMRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_CANGA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata GN=TIM9 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   64 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 300
            +D L  +++     +++  Q++D +R+Y+ LVERCF DCV++FT   L  +EE+C+++C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNAKEQQEFQKLVEQKQMKDFMRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of FC872563 vs. ExPASy Swiss-Prot
Match: TIM9_CRYNE (Mitochondrial import inner membrane translocase subunit TIM9 OS=Cryptococcus neoformans GN=TIM9 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   85 DKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ 303
            ++A M+ +I+  Q++D +R+Y+ LVE+CFN C  +FT K L   E TCV  C +KFLKHS RVG RFAE N++
Sbjct:   10 EQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQDFTSKALTTNETTCVQNCTDKFLKHSERVGARFAEHNAE 82          
The following BLAST results are available for this feature:
BLAST of FC872563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_ARATH4.992e-4083.87Mitochondrial import inner membrane translocase su... [more]
TIM9_ORYSJ3.029e-3779.57Mitochondrial import inner membrane translocase su... [more]
TIM9_MESCR1.963e-3677.42Mitochondrial import inner membrane translocase su... [more]
TIM9_ZYGBA4.858e-1949.37Mitochondrial import inner membrane translocase su... [more]
TIM9_ASHGO2.411e-1848.10Mitochondrial import inner membrane translocase su... [more]
TIM9_YEAST7.015e-1846.84Mitochondrial import inner membrane translocase su... [more]
TIM9_YARLI2.041e-1746.84Mitochondrial import inner membrane translocase su... [more]
TIM9_KLULA3.481e-1746.84Mitochondrial import inner membrane translocase su... [more]
TIM9_CANGA4.547e-1745.57Mitochondrial import inner membrane translocase su... [more]
TIM9_CRYNE3.849e-1650.68Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CD10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872563 ID=FC872563; Name=FC872563; organism=Citrus clementina; type=EST; length=694bp
GGGGAGTTCAACAACATTCAACACAGAAAAGGAGCCGGAATGGACAAGAA
CATGTTGGCTGGACTTGACGGTCTTCCCGAACAGGACAAGGCCAGAATGG
CTGCCATGATCGACCATCTTCAATTACGGGACAGTTTGAGGATGTACAAC
TCCCTTGTGGAGAGATGTTTCAACGATTGTGTGGACAACTTTACACGCAA
GACCCTACAGAAGCAAGAGGAGACCTGCGTCATGCGTTGTGCTGAGAAAT
TTCTGAAGCACTCAATGCGCGTTGGTATGAGGTTTGCAGAACTCAATTCA
CAAGCAGCTACACAAGAATAGTATCCCCAGACGACCATTAACGGCGCCAA
GAAACCATTTGGTTTATTCCTGTAGAATTTCTTTTGGATCAAATTAGTGG
CTATTAATTTTCTGCTTTTGCCATCAGTGGAAGCCCAAGTTTGCGGTAGG
ATTCATAATCATCGTCTGAAAAATCATTTTTACACATTTTATCATGGCTT
CACATATTGAATAATTGAATCAAATATAACGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACTGGGGGGCCCCCCCCGCCCCAATAAA
TTTAAAACCAAAAAAATTTTATGGGGGGGCCCCAATTTAAGCCC
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