FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 9.668e-73
Identity = 128/159 (80.50%), Postives = 150/159 (94.34%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MAIP+P+RQLFI+GEWREP+LKKRIPIVNP TEE++GDIPAAT EDV++AV+AAR+ALSRN+GKDW+ A GA RAKYLRAIAAK+ ERK++LA LE +DCGKPL+EAVWD+DDVAGCFE+YADLAEGLDAKQKAPVSLPME+FKS VLK+P+GVVGLIT
Sbjct:    1 MAIPMPTRQLFIDGEWREPILKKRIPIVNPATEEVIGDIPAATTEDVDVAVNAARRALSRNKGKDWAKAPGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVWDMDDVAGCFEFYADLAEGLDAKQKAPVSLPMESFKSYVLKQPLGVVGLIT 159          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.203e-68
Identity = 121/159 (76.10%), Postives = 141/159 (88.68%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MAI +P RQLFI G+W EPVL+K +P+VNP TE+I+G IPAAT+EDVELAV+AAR+A +RN GKDW+ A+GA RAKYLRAIAAK+ ERKSELANLE IDCGKPL+EA WD+DDVAGCFEYYADLAEGLDAKQK P+SLPM+ FK  +LKEPIGVVG+IT
Sbjct:    1 MAITVPRRQLFIGGQWTEPVLRKTLPVVNPATEDIIGYIPAATSEDVELAVEAARKAFTRNNGKDWARATGAVRAKYLRAIAAKVIERKSELANLEAIDCGKPLDEAAWDMDDVAGCFEYYADLAEGLDAKQKTPLSLPMDTFKGYILKEPIGVVGMIT 159          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 7.927e-67
Identity = 123/159 (77.36%), Postives = 141/159 (88.68%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MAI +PSRQLFI+GEWREP+ K RIPI+NP+TEEI+GDIPAATAEDVELAV AAR+AL RN+G+DW+SASGA RAKYLRAIAAKITE+K   A LE +DCGKPL+EA  DIDDVAGCFEYYAD AE LDAKQKAP++LPM+ FK  VLK+PIGVVGLI+
Sbjct:    1 MAIRVPSRQLFIDGEWREPIKKNRIPIINPSTEEIIGDIPAATAEDVELAVAAARRALKRNKGEDWASASGAHRAKYLRAIAAKITEKKDYFAKLEAMDCGKPLDEAARDIDDVAGCFEYYADQAEALDAKQKAPIALPMDTFKCHVLKQPIGVVGLIS 159          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.501e-62
Identity = 112/159 (70.44%), Postives = 137/159 (86.16%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            M++PIPSRQLFI+GEWREP+ K RIPI+NP+ EEI+GDIPA ++ED+E+AV AAR+AL RN+G++W++ SGA RA+YLRAIAAK+TERK     LETID GKP +EAV DIDDVA CFEY+A  AE +DAKQKAPV+LPME FKS VL++PIGVVGLIT
Sbjct:    1 MSMPIPSRQLFIDGEWREPIKKNRIPIINPSNEEIIGDIPAGSSEDIEVAVAAARRALKRNKGREWAATSGAHRARYLRAIAAKVTERKDHFVKLETIDSGKPFDEAVLDIDDVATCFEYFAGQAEAMDAKQKAPVTLPMERFKSHVLRQPIGVVGLIT 159          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.731e-59
Identity = 113/159 (71.07%), Postives = 132/159 (83.02%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MA PIP+RQLFI+GEWREP+ K RIP++NP+TEEI+GDIPAATAEDVE+AV AAR+A  RN   +WS+ SGA RA YLRAIAAKITE+K     LETID GKP +EAV DIDDVA CFEY+A  AE LD KQKAPV+LPME FKS VL++P+GVVGLI+
Sbjct:    1 MAFPIPARQLFIDGEWREPIKKNRIPVINPSTEEIIGDIPAATAEDVEVAVVAARRAFRRN---NWSATSGAHRATYLRAIAAKITEKKDHFVKLETIDSGKPFDEAVLDIDDVASCFEYFAGQAEALDGKQKAPVTLPMERFKSHVLRQPLGVVGLIS 156          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.658e-59
Identity = 116/162 (71.60%), Postives = 136/162 (83.95%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGC---FEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MA PIP+RQLFI+GEWREP+LK RIPI+NP+TEEI+GDIPAATAEDVE+AV AAR+A  RN+G+DW +A  + RAKYLRAIAAKITE+K     LET+D GKP +EAV DIDDVA C   FEY+A  AE LDAKQKAPV+LPME FKS VL++PIGVVGLI+
Sbjct:    1 MAFPIPARQLFIDGEWREPLLKNRIPIINPSTEEIIGDIPAATAEDVEVAVVAARKAFKRNKGRDW-AALWSHRAKYLRAIAAKITEKKDHFVKLETLDSGKPRDEAVLDIDDVATCFEYFEYFAGQAEALDAKQKAPVTLPMERFKSHVLRQPIGVVGLIS 161          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.312e-58
Identity = 113/161 (70.19%), Postives = 129/161 (80.12%), Query Frame = 3
Query:   45 MAMAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MA    IP R LFI G WREP L +R+P+VNP TE  +GDIPAATAEDVELAV AAR A  R+ G+ WS A GA RAKYL+AIAAKI ++KS LA LET+D GKPL+EA  D++DVA CFEYYADLAE LD KQ+AP+SLPMENF+S VLKEPIGVVGLIT
Sbjct:    1 MAAPSAIPRRGLFIGGGWREPSLGRRLPVVNPATEATIGDIPAATAEDVELAVSAARDAFGRDGGRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPLDEAAGDMEDVAACFEYYADLAEALDGKQRAPISLPMENFESYVLKEPIGVVGLIT 161          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.451e-52
Identity = 108/161 (67.08%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   45 MAMAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            MA    IP R LFI G WREP L + IP++NP TE+ +GDIPAATAEDVELAV A    L+R R + W+ ASGA RAKYL AIAAKIT + + LA LET+D GKP +EAV D+DDVA CFEYYA LAE LD KQ AP+SLPME FK+ VLKEPIGVVGLIT
Sbjct:    1 MAAPPAIPRRGLFIGGGWREPTLGRHIPVINPATEDTIGDIPAATAEDVELAVAAGGPVLARRR-EPWARASGATRAKYLNAIAAKITGKIAYLALLETVDSGKPKDEAVADMDDVAACFEYYAALAEALDGKQHAPISLPMEEFKTYVLKEPIGVVGLIT 160          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.952e-21
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   69 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            S+ LFI+GEW     ++   I+NP  +E +  +     ED   A+ AAR+A  +    +WSS SG  R K +  IA  I     ELA LE++D GK LEE+  D+DD+A  F+YYA LA   D      +S P+ + +S +++EPIGV G IT
Sbjct:    2 SQTLFIDGEWISAEKEQIRSIINPFNQEEIATVSEGGREDAIKAIAAARRAFDKG---EWSSLSGLERGKIVLKIAELIRRDLEELAELESLDTGKTLEESKADMDDIANVFQYYAGLA---DKDGGEIISSPIPDSESKIIREPIGVCGQIT 148          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BADH_SCHPO (Probable betaine aldehyde dehydrogenase OS=Schizosaccharomyces pombe GN=meu8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.035e-21
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   66 PSRQLFINGEWREPV--LKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLIT 527
            P   LFI+G++  P+    K IP++NP TEEI+G    A+A+DV+ AV+ A       R   W+   G  R   LR IA  + E++  LA ++TI+CGKP   A++DID  A  FEYYA++AE  +   K P  LP    F +   + P GV+G+IT
Sbjct:   19 PENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTF---RSGIWAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETDNPTVKVP--LPNNPGFCAFEKRFPRGVIGVIT 170          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
BADH1_ARATH9.668e-7380.50Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH2_ARATH4.203e-6876.10Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
BADH_AMAHP7.927e-6777.36Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_BETVU4.501e-6270.44Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_SPIOL2.731e-5971.07Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_ATRHO4.658e-5971.60Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_ORYSJ2.312e-5870.19Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_HORVU1.451e-5267.08Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
BETB_BACSU2.952e-2139.87Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
BADH_SCHPO5.035e-2140.13Probable betaine aldehyde dehydrogenase OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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