FC872667
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27 Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 1 Query: 4 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 327 V MT +KYIPQA MNF RKST G+SIGNILLDF GG NY QM++QSIDQNSW NFYGN+GKT + QHYVLYP KK S + ++ EPL+ SS Sbjct: 160 VFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15 Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 336 +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG + QMI+ + + + WV+ +G+ K + QHYV Y + SS L+ V+ S P Sbjct: 281 ITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14 Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1 Query: 10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 348 +T KY PQA N++RKST G+SIGNILLDF GG + QM++Q+I+ N W FY N K + QHY LYP + + D + +++ ++H ++N Sbjct: 277 VTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYP 258 +T KY PQA N+ RKST G+SIGNI+LDF GG + QMI+Q+++ N W FY N K + QHYVLYP Sbjct: 278 VTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1 Query: 10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 264 +TL+KY PQA MNF KST+G+SIGN+LLDF GG + QM +QS + + W +G+ K QH+ LY K Sbjct: 276 VTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 Query: 10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 255 +TL+KY PQA MNF KST+G+SIGN+LLDF GG + QM +QS + + W +G+ K QH+ LY Sbjct: 276 VTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12 Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = 1 Query: 4 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 264 +I+TLIKY PQA MNF KST G+SIG +LLDF GG + QM +QS + + W +G+ K QH+ LY K Sbjct: 274 LIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12 Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1 Query: 4 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKA 270 + +T IKYIPQA +NF+ KST G+S+ N+LLDF GG + QM + D +W F G+ K I QHY+LY K+ Sbjct: 154 LFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242 The following BLAST results are available for this feature:
BLAST of FC872667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872667 ID=FC872667; Name=FC872667; organism=Citrus clementina; type=EST; length=700bpback to top |