FC872667

Overview
NameFC872667
Unique NameFC872667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15210 contig Ccv1_Contig15210:528..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    4 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 327
            V MT +KYIPQA MNF RKST G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT             + QHYVLYP KK   S +  ++   EPL+ SS
Sbjct:  160 VFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 336
            +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + + + WV+ +G+  K              + QHYV Y   +   SS L+    V+     S  P
Sbjct:  281 ITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 348
            +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K              + QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct:  277 VTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYP 258
            +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K              + QHYVLYP
Sbjct:  278 VTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 264
            +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:  276 VTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   10 MTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 255
            +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY
Sbjct:  276 VTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    4 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 264
            +I+TLIKY PQA MNF  KST G+SIG +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:  274 LIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360          
BLAST of FC872667 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1
Query:    4 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKKA 270
            + +T IKYIPQA +NF+ KST G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K              I QHY+LY   K+
Sbjct:  154 LFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242          
The following BLAST results are available for this feature:
BLAST of FC872667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH1.694e-2758.33Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DROME1.487e-1540.37Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEBR2.805e-1436.84Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
CTNS_CAEEL3.664e-1446.99Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_BOVIN1.539e-1242.35Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_HUMAN4.479e-1242.68Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_MOUSE5.849e-1242.53Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DICDI5.849e-1240.45Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3BH01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872667 ID=FC872667; Name=FC872667; organism=Citrus clementina; type=EST; length=700bp
GGGGTTATTATGACACTCATCAAGTATATTCCACAGGCCATCATGAACTT
TAGGCGAAAGAGTACAGATGGTTTCAGCATTGGAAATATATTACTTGATT
TTCTTGGAGGGTGTACTAATTACTCACAAATGATTGTTCAGTCTATTGAT
CAAAATTCTTGGGTTAACTTTTATGGAAATATAGGGAAGACATTGCTATC
TCTGGTATCCGTAGTCTTTGATCTTCTTTTCATATGTCAGCATTATGTGC
TATATCCTGCCAAGAAAGCGGTAATCTCTTCTAAACTTAGCAAAGATGGT
GGTGTAGAGCCACTTCTTAAGTCTTCTGATCACCCAGAGTCAGAAAATGT
ATAAAGGTGAAATGCCAACACAATTTGTGAGGACGCTATCTATTTACACC
ACATAGAAATCAAACCATATTGTTGCTGCATGCACACCACATCAGCAATT
TGTATGATTTTCTTACTTGTGTATAGGAAGAAACAGTCATGTTCTGGAAT
TAGAAATTACTATCAAATATGATTCCTGTAATTGGTTAAAGCTATTAATC
TTAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top