FC872683

Overview
NameFC872683
Unique NameFC872683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1029 contig Ccv1_Contig1029:1..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872683 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.479e-80
Identity = 159/289 (55.02%), Postives = 189/289 (65.40%), Query Frame = 1
Query:   43 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGI 900
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK  C NG + RDPM RCV+GI
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGI 280          
BLAST of FC872683 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.467e-79
Identity = 157/289 (54.33%), Postives = 188/289 (65.05%), Query Frame = 1
Query:   43 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGI 900
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK  C NG + RDPM RCV+GI
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGI 280          
BLAST of FC872683 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.451e-54
Identity = 116/243 (47.74%), Postives = 153/243 (62.96%), Query Frame = 1
Query:  181 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGI 900
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  M   V GI
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGI 280          
BLAST of FC872683 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.567e-43
Identity = 103/248 (41.53%), Postives = 141/248 (56.85%), Query Frame = 1
Query:  181 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGI 900
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PM R V G+
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFREC-QGPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGL 280          
BLAST of FC872683 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.531e-40
Identity = 103/273 (37.73%), Postives = 148/273 (54.21%), Query Frame = 1
Query:  106 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGI 900
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP                 CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S L+C    +P+  M R + GI
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNH---TISCAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGI 299          
The following BLAST results are available for this feature:
BLAST of FC872683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN4.479e-8055.02Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI6.467e-7954.33Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.451e-5447.74Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH2.567e-4341.53Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL4.531e-4037.73Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DA08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872683 ID=FC872683; Name=FC872683; organism=Citrus clementina; type=EST; length=904bp
GCGGGGGTGCACAAACTCAACACACAAACAATTTAGACTACAATGACAGC
AGTAGCCGATAGCAAGCCCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAA
CGGCCTTACTATCAGTTTTTTCAAGTGGACCTTATTCCCCGAAACTCAAG
ACAGTGAATAAACCATGGTTTAATAGTTTTCCTCCAAAGCCGTTGAATAT
TGTTTATCCAGAAGAAAAAGGAACATATGAAGTTATTTTGTTTTTCCACG
GCACTGCTCTCAGCAACACAAGCTATTCCAATCTCTTAGACCACTTGGCT
TCCCATGGATACATCGTTGTTGCCCCTCAGTTATACGATTTTCTGCCGCC
GAAAGGAAACGGAGAAGTTAACGATGCAGCAAACGTCCTCAACTGGTTAT
CAACAGGCCTTCAATCAGAACTCCCGGAAAATGTTGAAGCTAACCTAAAC
TACGTTGCTCTTATGGGACACAGTCGCGGAGGACTAATAGCGTTCGGTCT
GGCACTTGGCTATGCAACAAATCCTCCAGTTAGCATTAAAATTTCAGCAT
TAGTAGGCATAGACCCAGTTGCGGGGTTAGCCAGCGTTCATAGTGAACTT
GAACCCCCGATTCTCAGTCATGACTCATTCGAGTTCTCAATTCCTGTTAC
TGTAATTGGCACCGGACTCGGTGGTGTGACAAAGTGCATGCAGCCTTGTG
CACCGGAAAACAAAAACCATGAGCAATTTTTCAAGAGGTGTACATATTCA
GATCATGCTCATTTTGATGCTAAGGATTATGGTCACATGGACATTTTAGA
TGATAATCCCCAGGGACCAAAGAATTGGGCAATTTCAAAACTTTTGTGCA
CGAATGGAAAGAAACCAAGGGATCCCATGANGAGATGTGTTGCTGGCATT
GCTG
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