FC872829

Overview
NameFC872829
Unique NameFC872829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.577e-48
Identity = 108/182 (59.34%), Postives = 129/182 (70.88%), Query Frame = 2
Query:  173 NNY-LPFNENDSKEMLLYGLIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERD----NLRIENFVVLEDLGADY 703
            NNY LPFNENDS+EM LYGLI ++T +   ++   S+ +  + VSS   E     KSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+S            FSMRGSSAILNF  ERVQESL ++K   E+GCSPVVALKRKHSMRR+M   NKK K+ D    +++++N VV EDLG  Y
Sbjct:   32 NNYSLPFNENDSEEMFLYGLIEQSTQQTYIDS--DSQDLPIKSVSSRKSE-----KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRM--TNKKTKDSDFDHRSVKLDNVVVFEDLGEQY 204          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.846e-28
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 2
Query:  227 LIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRK 616
            L++  T     +       I +EE    T     +EKSYRGVR+RPWGKFAAEIRDSTR GIRVWLGTFD+            F+++GS A+LNFP + V+ESL+ M+  N  +G SPV+ALKRKHSMR +
Sbjct:   44 LLSSPTDNYCDDFFAFESSIIKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNR 174          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.148e-28
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  257 SEALVSSKRIKEEEVSSTTEENPT---KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRK 616
            S  ++  + I+  +VS++ EE      +E+SYRGVR+RPWGKFAAEIRDSTR+GIRVWLGTFD             F+ +GS A LNFPVE V+ESLK M+  N  +G SPV+ALKRKHS+R +
Sbjct:   55 SPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNR 178          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.416e-20
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  182 LPFNENDSKEMLLYGLIAKATPEATSEALVS------SKRIKEEEVSSTTEENP----------TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPV 517
            LP  ENDS++ML+YGL+  A    TS + +S      + +++  E  +  EE P           K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+LNFP+
Sbjct:   48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.382e-20
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  182 LPFNENDSKEMLLYGLIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESL 538
            LP NENDS+EM+LY ++ +A           ++ +    +    +      K YRGVRRRPWGK+AAEIRDS RHG RVWLGTF++            F MRG+ A+LNFP E V  S+
Sbjct:    9 LPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQ---CIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASV 124          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19
Identity = 58/138 (42.03%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  182 LPFNENDSKEMLLYGLIAKA-------------------------TPEATSEALVSSKRIKEEEVSSTTEE-NPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPV 517
            LP  ENDS++ML+YG++  A                         TPE  S A V S  +K+E+ S  +      K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+LNFP+
Sbjct:   71 LPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPE--SFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.489e-19
Identity = 55/125 (44.00%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  182 LPFNENDSKEMLLYGLIAKA-----TPE-ATSEALVSSKRIKEEEVSSTTEENPT--------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 514
            LP   NDS++M++YG +  A     TP   TSE +    R + E   ST+   PT        K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT++S            F MRG+ A+LNFP
Sbjct:   40 LPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.326e-18
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  194 ENDSKEMLLYGLIAKATPEATS-----EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 520
            E ++K  +    I+  +P+ TS      +L  +  +K++EV    E  PT++K YRGVR+RPWGKFAAEIRD  R G RVWLGTFD+            F +RGS AI+NFP+E
Sbjct:   91 EFETKPNVSAARISSNSPKQTSFKERKPSLNIAIPMKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.857e-18
Identity = 62/165 (37.58%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  182 LPFNENDSKEMLLYGLIAKA-----TPEATSEALVSSKRIKEEEVSSTTEEN--PTKE----KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHS---MRRKMVTNNK 634
            LP   +DS++M++Y L+  A     +P   S   V S++ +EE V S  E    P  E    + YRGVRRRPWGKFAAEIRD  ++G RVWLGT+++            + MRGS A LNFP        + ++   +   SP  A   ++S    RRK V   K
Sbjct:   41 LPLKVDDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEK 205          
BLAST of FC872829 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  182 LPFNENDSKEMLLYGLIAKATPEATSEALVSSKRIK---EEEVSSTTEENPT---------------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 514
            LP   +DS++M++YGL++ A     +   ++S  IK    EE+   T   P+               K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT+++            + MRGS A+LNFP
Sbjct:   32 LPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
The following BLAST results are available for this feature:
BLAST of FC872829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF92_ARATH3.577e-4859.34Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF94_ARATH1.846e-2850.38Ethylene-responsive transcription factor ERF094 OS... [more]
ERF93_ARATH3.148e-2854.03Ethylene-responsive transcription factor 15 OS=Ara... [more]
EF101_ARATH2.416e-2043.75Ethylene-responsive transcription factor 2 OS=Arab... [more]
PTI5_SOLLC5.382e-2044.54Pathogenesis-related genes transcriptional activat... [more]
EF100_ARATH2.045e-1942.03Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC3.489e-1944.00Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF5_TOBAC1.326e-1844.74Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF1_TOBAC3.857e-1837.58Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY6.579e-1838.76Ethylene-responsive transcription factor 2 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872829 ID=FC872829; Name=FC872829; organism=Citrus clementina; type=EST; length=928bp
GGGGACTGAACTACGCAACACAACTAGGGAAAAAACAGAGTGAAAAACAG
AGTCTCAGAACCTGAACACACACTCTCATCAAATCCTAATGGATTCCTTG
TTCTTCCACTCTCCAAATTCAATTTCCTCATCGGAATCCTCTTTCGGGTC
ACCGGAGTCTTTCCCTTTTTATAACAATTATCTTCCATTCAATGAAAATG
ACTCAAAAGAAATGCTTCTCTATGGACTAATAGCAAAAGCCACACCGGAA
GCAACATCAGAAGCACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGGT
GAGTTCAACAACAGAGGAAAACCCCACCAAGGAAAAGTCATATAGAGGCG
TTCGACGGCGGCCGTGGGGGAAATTTGCAGCAGAAATAAGAGATTCAACT
AGGCATGGGATTAGGGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAGC
TGCTTTGGCTTACGATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCTA
TACTCAATTTTCCCGTTGAAAGGGTTCAAGAATCACTTAAAGACATGAAG
TGTAACACCGAGGAGGGATGCTCACCTGTGGTTGCACTAAAGAGGAAACA
TTCTATGAGAAGAAAAATGGTGACTAATAATAAGAAGCATAAAGAGAGAG
ATAATTTGAGGATTGAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGAT
TACTTGGAAGAGCTGCTAAGTTCATCTGAAAGTACTACTACTACTACAGC
AAGACCTCGCTAATTGGTGAATTAGATAATAAGTCAACTACTTGTAACTT
TCTGGCCTTATCTTAATCTTCTTGCCCTTTTTTTTTTAATTTAGTTTATG
TCGTTATCTTTCTTTTCAATATGTAAACCAAAGACGGTTTATGCCTGTAC
AAGCTTCCATTTTTTGAAAGCAATTCGG
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