FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:897..1600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.531e-60
Identity = 104/188 (55.32%), Postives = 149/188 (79.26%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 588
            D E++INFAVFPS QGGPH + +  +AVALK+AS+P F+ Y KQV+ N+  +G  L  +GYSLVT GT+NHLVLWDLRP G+TG+K+EK CD  +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  292 DLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 113/189 (59.79%), Postives = 143/189 (75.66%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 588
            YD E KINFAVFPSLQGGPH + +  +AVALK+A +  FK YA QVK NA A+GN L  KGY LVT GT+NHL+LWDLRP  LTGNK EK  D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  268 YDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 1
Query:    4 QPEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 618
            Q +  +YDFEDKIN AVFP LQGGPHNH +  LAVALKQA+T  +KAY +QV +N+      L  +GY LV+GGT+NHLVL +L+P G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+  +AVT+ L+++ E  G  LKDF   + ++  I++    L+ +VE+FA  F   GF+   MKYK+
Sbjct:  308 QGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.273e-53
Identity = 107/208 (51.44%), Postives = 145/208 (69.71%), Query Frame = 1
Query:    4 QPEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 612
            Q +   YD+EDKIN AVFP LQGGPHNH +  LAVALKQA+TP ++AY +QV +N+      L+ KGY LV+GGTENHLVL +L+  G+ G++VEK+ +L +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+   AV+L L+++ E  G  LKDF + L  +     +I  LK DVE+FA  F   GF+ + MKY
Sbjct:  309 QGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.614e-52
Identity = 104/194 (53.61%), Postives = 136/194 (70.10%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 591
            Y FED+INFAVFPSLQGGPHNH + A+AVALKQA TP F+ Y+ Q+  NA A+ N L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSRG LE DF ++  F+   V + LE++ +  K L+DF   L+ + +     AD    VE+FA +F MPGF
Sbjct:  309 YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.299e-51
Identity = 102/195 (52.31%), Postives = 135/195 (69.23%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 588
            Y+ E  IN AVFP LQGGPHNH +  +AVALKQA TP F+AY +QV AN  AL   L G GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  286 YNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.696e-51
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 588
            +Y+ E  IN AVFP LQGGPHNH +  +AVALKQA T  FK Y  QV AN  AL   LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  285 LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.893e-51
Identity = 102/195 (52.31%), Postives = 133/195 (68.21%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 588
            Y+ E  IN AVFP LQGGPHNH +  +AVALKQA TP F+AY +QV AN  AL   L G GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF ++  F+HR + LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  286 YNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.779e-51
Identity = 103/195 (52.82%), Postives = 132/195 (67.69%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 588
            +Y+ E  IN AVFP LQGGPHNH +  +AVALKQA T  FK Y  QV AN  AL   LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  285 LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.099e-50
Identity = 100/196 (51.02%), Postives = 133/196 (67.86%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 588
            +Y+ E  IN AVFP LQGGPHNH +  +AVALKQA TP FK Y +QV AN  AL   L   GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LT++IQ + G    LK+F + L     + + + AL+ +VE FA+ F +PG
Sbjct:  285 LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI1.531e-6055.32Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI1.999e-6059.79Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYM_ARATH4.037e-5349.52Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA5.273e-5351.44Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN7.614e-5253.61Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_BOVIN1.299e-5152.31Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_HUMAN1.696e-5152.82Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_SHEEP2.893e-5152.31Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_PONAB3.779e-5152.82Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_RABIT1.099e-5051.02Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
back to top