FC872949

Overview
NameFC872949
Unique NameFC872949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10114 contig Ccv1_Contig10114:1..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: TBC15_MOUSE (TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.115e-17
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMW 290
            SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL  L+++ +++D     +LE+   G   F FR L++ F+REFSF D L LWE+MW
Sbjct:  444 SPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMW 536          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: TBC15_HUMAN (TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.115e-17
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMW 290
            SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL  L+++ +++D     +LE+   G   F FR L++ F+REFSF D L LWE+MW
Sbjct:  461 SPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMW 553          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: TBC17_HUMAN (TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYL 323
            SP++ +++NE DAFWCF   M  ++GNF   ES   ++ QL  L  + +V+DP L   L++   G   F FR L++ F+REF F D L LWE++W     P+L  L
Sbjct:  425 SPILYVIQNEVDAFWCFCGFMELVQGNFE--ESQETMKRQLGRLLLLLRVLDPLLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLL 528          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: TBC17_MOUSE (TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYL 323
            SP++ +++NE DAFWCF   M  + GNF   ES   ++ QL  L  + +V+D  L   L++   G   F FR L++ F+REF F D L LWE++W     P+L  L
Sbjct:  425 SPILFVVQNEVDAFWCFCGFMELVHGNFE--ESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLL 528          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: GYP7_YEAST (GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae GN=GYP7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.938e-14
Identity = 46/190 (24.21%), Postives = 76/190 (40.00%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYXXXXXXXXXXXXXXXXXXXXIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDMTGNLD 575
            SP+ ++++ E   FWCF   M  +  NF   +S  G+  Q+  L  + Q++ P+L +HL     G+  F FRML+V F+REF   D +++WE  W   Y                                                      +F + ++L+  S  +LQ     D ++K  N++ G LD
Sbjct:  538 SPIYVIMKEEWKTFWCFTHFMDIMERNFLRDQS--GIHEQMLTLVELVQLMLPELSEHLNKCDSGNLFFCFRMLLVWFKREFEMEDIMHIWENFWTFYYSSQ-------------------------------------------------FQLFFMLAILQKNSQAILQHLNQFDQILKFFNELNGKLD 676          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: GYP7_DEBHA (GTPase-activating protein GYP7 OS=Debaryomyces hansenii GN=GYP7 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.233e-13
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDP--HLFY 320
            SP+ +  ++E+  FW F   M R+  NF   +S  G++ Q+  L  + Q + P L +HLE     D  F FRML+V F+REF +   L LWE++W   Y    HLF+
Sbjct:  545 SPLYVTFQDESLTFWAFVNFMDRMERNFLRDQS--GMKNQMLTLNELVQFMLPDLFKHLEKCESTDLYFFFRMLLVWFKREFEWSSVLSLWEILWTDYYSGQFHLFF 649          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: GYP7_CANGA (GTPase-activating protein GYP7 OS=Candida glabrata GN=GYP7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.233e-13
Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDP--HLFYL 323
            SP+  ++ +E   FWCF   M R+  NF   +S  G+  Q+  L  + Q++ P+L  HL+     D  F FRML+V F+REF++ D   +WE+ +   Y     LF++
Sbjct:  528 SPLYYIIRDEETTFWCFTNFMERMERNFLRDQS--GIRDQMLALTDLCQLMLPRLSAHLQKCDSSDLFFCFRMLLVWFKREFNYDDIFNIWEVFFTDFYSSQYQLFFM 633          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: GYP7_YARLI (GTPase-activating protein GYP7 OS=Yarrowia lipolytica GN=GYP7 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.040e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLY 326
            SP+ ++L+++  AFW F   M R+  N+   +S  G+  QL  L  + Q + P L++HLE     +  F FRML+V F+RE  + D L LWE++W  +Y    F L+
Sbjct:  524 SPLYVVLQDDTLAFWAFSAFMERMERNYLRDQS--GMRNQLLCLDHLVQFMLPSLYKHLEKTESTNLFFFFRMLLVWFKRELLWDDVLRLWEVLWT-DYLSSQFVLF 627          
BLAST of FC872949 vs. ExPASy Swiss-Prot
Match: GYP7_SCHPO (GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe GN=gyp7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 3
Query:    6 SPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWA--LEYDPHLFYLY 326
            +P+ +   + A  FW    LM+RL  NF   +S  G+  QL  L  + + +DP+L  HLE     +    FRML++ F+REF +   L LW++++   L YD H+F  Y
Sbjct:  538 APIYVTFNDNALTFWGMVGLMKRLHFNFLRDQS--GMHRQLDTLRLLIEFMDPELFAHLEKTDSSNLFCFFRMLLIYFKREFDWEVLLKLWDVLFTNYLSYDYHIFVAY 644          
The following BLAST results are available for this feature:
BLAST of FC872949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TBC15_MOUSE7.115e-1743.16TBC1 domain family member 15 OS=Mus musculus GN=Tb... [more]
TBC15_HUMAN7.115e-1743.16TBC1 domain family member 15 OS=Homo sapiens GN=TB... [more]
TBC17_HUMAN4.612e-1640.57TBC1 domain family member 17 OS=Homo sapiens GN=TB... [more]
TBC17_MOUSE3.904e-1539.62TBC1 domain family member 17 OS=Mus musculus GN=Tb... [more]
GYP7_YEAST1.938e-1424.21GTPase-activating protein GYP7 OS=Saccharomyces ce... [more]
GYP7_DEBHA6.233e-1337.38GTPase-activating protein GYP7 OS=Debaryomyces han... [more]
GYP7_CANGA6.233e-1334.26GTPase-activating protein GYP7 OS=Candida glabrata... [more]
GYP7_YARLI4.040e-1236.45GTPase-activating protein GYP7 OS=Yarrowia lipolyt... [more]
GYP7_SCHPO4.467e-1134.86GTPase-activating protein gyp7 OS=Schizosaccharomy... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DE06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872949 ID=FC872949; Name=FC872949; organism=Citrus clementina; type=EST; length=912bp
GGGGTTCCCCCATGATAATTCTGCTTGAAAATGAAGCTGATGCATTTTGG
TGCTTCGAACGTTTGATGCGCAGATTGCGAGGAAATTTCAGATGCACTGA
GAGCTCTGTTGGGGTGGAGACACAACTTAGTAATTTGGCTTCAATTACTC
AGGTTATCGATCCAAAACTTCATCAACATTTAGAGACACTGGGCGGAGGT
GACTATCTCTTTGCGTTCAGAATGCTTATGGTCTTGTTCCGGAGAGAATT
TTCATTTTGTGACTCATTATATCTCTGGGAGATGATGTGGGCCCTAGAAT
ATGATCCCCACTTGTTCTATCTGTATGAAGAAGCTGAATCAGCTGCTAGT
ACTAAATCTGAGGGATCTAAAGCAAAAGCAAAATCAATTCGTCAGTGTGG
GAAGTATGAGAGAGAAAATATGAAAAATGGAGCAAAGACTTCAGAAGCTC
CCCTTCCCATTTCTGTGTTTCTTGTTGCCAGTGTCTTAAAAGATAAGAGC
TCAAAGCTGCTGCAAGAAGCTCGCGGCCTGGACGATGTTGTTAAGATATT
GAATGACATGACTGGAAATTTGGACGCCAAAAAAGCTTGCATTGGGGCTA
TGAAACTTCACAAGAAATATTTAAAAAAGGCCAAACAGACGTAGCATATT
GTGCATAGAATAGCTTCTTAGTTAATCGATAAGCGGCTTAAAAATGATGC
CACATGATTATAATATACGCTCCAGGAACTTTGGATCAGAGACTGCAGAA
TGGAATGATTATTCCAGCAAGCAGGGCACCTCGGCAAGAACTTCTTGTGC
CTGAAATCAATCTCTCATCAACTGTATATGCAAAACTTTTTCTTTTTCCT
TTTCTGAAGATCTTAATACGAATCAACATTTTGATACCATCGTTGTGATT
TATGATCACTTT
back to top