FC873019

Overview
NameFC873019
Unique NameFC873019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873019 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.991e-31
Identity = 81/186 (43.55%), Postives = 109/186 (58.60%), Query Frame = 2
Query:  155 DEVKPKAEAGMEVDDKKKHEVALNDAGSAAGLDLLGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 712
            DE +   E G  V D       +   GS         E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:    6 DEPRASVEGGCGVADGDGGAAEIGGTGSV--------EKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of FC873019 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 65/192 (33.85%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  152 VDEVKPKAEAGMEVDDKKKHEVALNDA---GSAAGLDLLGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPY-PVQSEAKASDT 715
            V E+   A AG +  +      ALN A    + A L +         +      ++  + + + P+QLTI +GG   VFD IPA+KV+EI+ IAA++          T+  N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY    SEA  ++T
Sbjct:   65 VQEIIRIAFAGKQTKNVTGINPALNRALSFSTVADLPIARRRSLQRFLEKRRDRSTKPDGSMILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------TETINLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of FC873019 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  344 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASDTKAQTPA 733
            LTIFYGG+V VFD   A+K +E++ +A   +  + T      N N    S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK PY +   A+AS +K   PA
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS-SKPTNPA 244          
BLAST of FC873019 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  338 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEA 700
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D  N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of FC873019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH5.991e-3143.55Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH4.608e-1533.85Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH6.654e-1439.39Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH1.812e-1138.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BF04FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873019 ID=FC873019; Name=FC873019; organism=Citrus clementina; type=EST; length=856bp
CACCACAAAAAGGCAAAATCAAAATTAAAACCAAAGCAAAGGCGAGGAAG
CTGCGAGAGAAAATTAGAAAAATTGAAAAAAAAATTAGGAGAAGAAGAGG
AAGGAGCCTGGAAATTTCTCGAGTTTAATTCAAATGGAGGAATTTGGGAC
TGTTGATGAAGTGAAGCCGAAGGCTGAGGCCGGAATGGAAGTAGACGATA
AGAAGAAGCATGAGGTTGCTCTAAACGACGCCGGATCTGCTGCAGGGCTT
GATTTGTTGGGGAACGAGGTGTTTAACAACACCATCAGGGCCACGGCAAT
CCCAACTTCTGGAGTGAATGCCACGGACCTTGCTCCAACTCAGCTTACGA
TCTTCTATGGTGGAAAAGTGTGTGTATTTGATGCAATTCCGGCAGACAAG
GTTCGTGAAATTATGCTTATTGCTGCCTCTTCTGCCACTGTTACTAACAC
AAGCGACATGAAGACGGACAATACCAACTGTCCTACCTCTTCACCAGTTC
TAACAAGGTCTCCTTCACTGCAAAGCACTGCAAGTGCTTTGGCATCACCT
CGGGCACAATCATATCCTGTTCAAAGGAATCTCCTCTGTAAATTGCAAGC
TGAACTACCAATGGCAAGGAGGCATTCCCTTCAGCGATTTTTCGAGAAGC
GACGTGACAGGCTGGTGAGCAAGAATCCATATCCTGTTCAATCAGAGGCA
AAAGCTTCTGACACCAAAGCTCAGACTCCTGCAGAGGCAGGTTGCTTTGA
GAAAACTTCCGTGCCTCANGAAGAATTGCAACCTAAAGCTGCAGCCAATG
TTGCATAAAATATCTATCATGCTTAGATGTTTGTAGTAAATAATCCAGAA
CTATCT
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