FC873045

Overview
NameFC873045
Unique NameFC873045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.802e-26
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 3
Query:    3 QLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLAC 182
            +LTIG+YSEREGY GS+YAPTYEDKDGDWMLVGDVPW MF+T+CKRLRIM+G+EAKGL C
Sbjct:  128 KLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGLGC 187          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.659e-26
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 QLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLACV 185
            +L IG+YSEREGY GS+YAPTYEDKDGDWMLVGDVPW MF+T+CKRLRIM+GSEA+GL CV
Sbjct:  135 KLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCV 195          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.391e-25
Identity = 48/59 (81.36%), Postives = 56/59 (94.92%), Query Frame = 3
Query:    9 TIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLACV 185
            T G+YSEREGYNGS+YAPTYEDKDGDWMLVGDVPW MF+++CKRLRI++GSEAKGL C+
Sbjct:  145 TFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL 203          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.372e-25
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 3
Query:   15 GKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLAC 182
            G+YSEREGYNGS+YAPTYEDKDGDWMLVGDVPW MF+++CKRLRIM+GSEAKGL C
Sbjct:  137 GEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLGC 192          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.966e-24
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query:    3 QLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLAC 182
            + ++G+Y ER+GY GSD+ PTYEDKDGDWML+GDVPW MFI TCKRLRIM+GSEAKGL C
Sbjct:  128 KFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGLGC 187          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 3
Query:    3 QLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLAC 182
            + ++G+Y EREGY GSD+ PTYEDKDGDWMLVGDVPW MF+++CKRLRIM+GSE KGL C
Sbjct:  124 KFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLGC 183          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.919e-20
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 3
Query:    3 QLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEA 167
            + T+G+YSEREGY GS + PTYEDKDGDWMLVGDVPW MF ++C++LRIM+GSEA
Sbjct:  110 KFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.685e-20
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3
Query:    3 QLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGL 176
            ++ IG+Y EREGY GS + PTYEDKDGDWMLVGDVPW MF ++CKRLRIM+GS+A  L
Sbjct:  113 KVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.171e-18
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3
Query:   42 NGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            NGSDY PTYEDKDGDWMLVGDVPW MF+ +CKR+RIM+GSEA GLA
Sbjct:  180 NGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLA 225          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3
Query:   42 NGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            NGS+Y PTYEDKDGDWMLVGDVPW MF+ +CKRLRIM+GSEA GLA
Sbjct:  221 NGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLA 266          
The following BLAST results are available for this feature:
BLAST of FC873045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IAA4_PEA2.802e-2683.33Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
AX22B_PHAAU3.659e-2681.97Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
AX22E_PHAAU1.391e-2581.36Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
AX22D_PHAAU2.372e-2585.71Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA3_ARATH9.966e-2475.00Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA4_ARATH2.220e-2373.33Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA1_ARATH3.919e-2072.73Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA2_ARATH6.685e-2070.69Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA16_ARATH8.171e-1882.61Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA30_ORYSJ1.394e-1782.61Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CA01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873045 ID=FC873045; Name=FC873045; organism=Citrus clementina; type=EST; length=423bp
TCCAGTTAACCATTGGCAAATACTCAGAGAGGGAAGGCTACAATGGATCT
GATTATGCCCCAACATACGAGGATAAAGATGGTGATTGGATGCTCGTTGG
CGATGTTCCGTGGGGGATGTTTATTACCACTTGCAAGAGACTAAGAATCA
TGAGAGGATCAGAAGCCAAAGGCTTAGCCTGTGTATGAATGAAATATGAA
ACCCACCGAGTCAGATATGTAAATTCCTTTACGGTTTCTCCAAGACTTTT
ATGGATCTATGCGGAGAATTAAAAGAAAAGAAGCACATGTACAGCTCATG
AATGTTCGGACTTCGGAAATGCTCACTCATTTTATTTTGTTTCCCTTTCA
CGGCGGCCTTTTTGTTAGCCTACTGATAGCTCTTGATCAAAATGTATGAA
TTGTCAAAAAAAAAAAAAAAAAA
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