FC873084

Overview
NameFC873084
Unique NameFC873084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14435 contig Ccv1_Contig14435:350..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_ARATH (Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 1.266e-76
Identity = 134/170 (78.82%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    1 IDDDLKEMEKNPA*SVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 510
            IDDDL+EM KN A SVSSCKPGNGV+ LRDDNL+TYWQSDG QPHL+NI             YVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TFVNTFMLQI +LSNHLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYST+R
Sbjct:   23 IDDDLREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_MOUSE (Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.854e-44
Identity = 87/166 (52.41%), Postives = 115/166 (69.28%), Query Frame = 1
Query:   13 LKEMEKNPA*SVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 510
            ++E+      S+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_HUMAN (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.854e-44
Identity = 87/166 (52.41%), Postives = 115/166 (69.28%), Query Frame = 1
Query:   13 LKEMEKNPA*SVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 510
            ++E+      S+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_BOVIN (Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.279e-44
Identity = 86/166 (51.81%), Postives = 115/166 (69.28%), Query Frame = 1
Query:   13 LKEMEKNPA*SVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 510
            ++E+      S+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVN+             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNLQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_DROME (Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=CG11419 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 6.789e-38
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 1
Query:   13 LKEMEKNPA*SVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP-RPNPIPHQQF-QFTSSEFITYSTVR 510
            ++E+      S+SSCKPG GV  LRD+ +DTYWQSDG  PHLVNI             Y D+KLDESYTPS+IS+R+G  F++L+E++ ++L +PTGWV I +   + +   + TFMLQI V+SNH NGRDTH+RQI+I+ P      P + F +F + +F  ++T+R
Sbjct:   30 VREVGAQAVWSLSSCKPGFGVERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRTFMLQIAVISNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR 195          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_DICDI (Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.014e-33
Identity = 76/165 (46.06%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   19 EMEKNPA*SVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQF-QFTSSEFITYSTVR 510
            E+ K+ + SVSS KPG+GV  LRD+NLDT+WQSD  QPH + I             + D+KLDESYTP KIS++AG   H+L+EI   EL +P+GW+ I LS N   +  +   +LQI +LSN  NGRD+H+RQIK+YG + +   + Q+ +F S E   + T+R
Sbjct:   27 EIGKHASWSVSSAKPGSGVEQLRDNNLDTFWQSDAQQPHHITIQFPKKCYIENLLIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFN---NNSLKANLLQISILSNLKNGRDSHIRQIKVYGKKISIENYTQYPKFNSPEVSMFQTLR 188          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_SCHPO (Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe GN=apc10 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.887e-30
Identity = 64/156 (41.03%), Postives = 100/156 (64.10%), Query Frame = 1
Query:   49 SSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP--RPNPIPHQQFQFTSSEFITYSTVR 510
            SS K G  +  +RDDN+DTYWQSDG+QPH ++I             Y+ + LDESYTPS + + AG GF +L+ + TV++ +PTGWV++ + G+  R+  ++  ++QI +L+NH +G+D+HVR IKIY P      I   +  +TS +FI+ + +R
Sbjct:   35 SSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPV-GDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQPAIAVDEIPYTSLQFISRNQLR 189          
BLAST of FC873084 vs. ExPASy Swiss-Prot
Match: APC10_YEAST (Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae GN=DOC1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 1
Query:   49 SSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNP 450
            SS K GN V    DDN DT+WQSDG QPH ++I             +     DESY PS + V AG    + +  K +E+    GWV +    N   D  +    ++++   NH NG+DTH+R I++Y P   P
Sbjct:   93 SSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEP 226          
The following BLAST results are available for this feature:
BLAST of FC873084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
APC10_ARATH1.266e-7678.82Anaphase-promoting complex subunit 10 OS=Arabidops... [more]
APC10_MOUSE4.854e-4452.41Anaphase-promoting complex subunit 10 OS=Mus muscu... [more]
APC10_HUMAN4.854e-4452.41Anaphase-promoting complex subunit 10 OS=Homo sapi... [more]
APC10_BOVIN8.279e-4451.81Anaphase-promoting complex subunit 10 OS=Bos tauru... [more]
APC10_DROME6.789e-3847.02Anaphase-promoting complex subunit 10 OS=Drosophil... [more]
APC10_DICDI1.014e-3346.06Anaphase-promoting complex subunit 10 OS=Dictyoste... [more]
APC10_SCHPO8.887e-3041.03Anaphase-promoting complex subunit 10 OS=Schizosac... [more]
APC10_YEAST4.575e-1835.82Anaphase-promoting complex subunit DOC1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CD12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873084 ID=FC873084; Name=FC873084; organism=Citrus clementina; type=EST; length=560bp
ATTGATGACGATCTAAAAGAAATGGAAAAAAACCCTGCTTGAAGTGTCAG
CTCTTGCAAGCCTGGCAATGGCGTCTCTGCTCTTCGCGATGACAATCTCG
ATACTTATTGGCAATCGGACGGTGCTCAGCCTCATTTGGTTAATATTCAG
TTCCAGAAGAAAGTTAAGTTGCAATTAGTTGTGCTTTATGTGGATTTTAA
GCTTGATGAGAGCTATACACCTAGTAAAATCTCTGTTCGAGCAGGTGATG
GTTTTCATAACTTGAAGGAGATAAAAACTGTGGAACTTGTCAAGCCAACT
GGGTGGGTCTATATATCGTTATCTGGAAATGATCCTAGGGACACTTTTGT
CAACACTTTTATGTTGCAAATTGTTGTGTTGTCAAACCATCTTAATGGGA
GGGATACTCATGTGCGCCAGATCAAAATTTATGGACCTCGACCGAACCCC
ATTCCACATCAACAGTTTCAGTTTACATCAAGTGAGTTCATCACTTACTC
TACTGTGAGGTGAGGTCAGAAATTTGCCGCATAGTGAAAGATCTTAATAG
CCTCGTGGCA
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