FC873175

Overview
NameFC873175
Unique NameFC873175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873175_ssr437 microsatellite FC873175_ssr437:437..448. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873175_ssr4 microsatellite FC873175_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:46..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 3.229e-108
Identity = 182/216 (84.26%), Postives = 205/216 (94.91%), Query Frame = 3
Query:    3 KINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 650
            KINKF+GMIEGLIWSPR GDS ++P+ WAFEEGPHSDFAGP SGSTACVA++R+  L VANAGDSRCVISRK QAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNL+RAIGDMEFKQNKFL +EKQIVTA+PD+N+VELCDDDDF+VLACDGIWDCM+SQQLVDFIHEQL+SE+K+S VCE+VL+RCLAP+T+GGEGCDNMTMI+V+FK P
Sbjct:  117 KINKFSGMIEGLIWSPRSGDSANKPDAWAFEEGPHSDFAGPNSGSTACVAVVRDKQLFVANAGDSRCVISRKNQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFKNP 332          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 7.192e-108
Identity = 181/217 (83.41%), Postives = 205/217 (94.47%), Query Frame = 3
Query:    3 KINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 653
            KIN+ +GMIEGLIWSPRG DSNDQ +DWAFEEGPHSDFAGPT GSTACVAI+RN+ L+VANAGDSRCVISR GQAYNLSRDHKP+LEAE+ERILKAGG+I  GRVNG++NL+RAIGD+EFKQNKFLS +KQ++TANPDIN+VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +++ES +SAVCERVL+RCLAPST GGEGCDNMTMI+VQFKKPI
Sbjct:  117 KINQISGMIEGLIWSPRGSDSNDQHDDWAFEEGPHSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMGRVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPI 333          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.733e-107
Identity = 182/217 (83.87%), Postives = 198/217 (91.24%), Query Frame = 3
Query:    3 KINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 653
            KINK  GMIEGLIWSPRG DSN+  +DW+FEEGPHSDFAGPT G TACVA+IRNN L+VANAGDSRCVISR GQAYNLSRDHKP+LEAE++RI+KAGGFIH GR+NGSLNL RAIGDMEFKQNKFL  EKQIVTANPDIN VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +  ES +SAVCERVL+RCLAPST GGEGCDNMTM++VQFKKPI
Sbjct:  117 KINKIGGMIEGLIWSPRGSDSNNGQDDWSFEEGPHSDFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFKKPI 333          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.394e-103
Identity = 171/216 (79.17%), Postives = 198/216 (91.67%), Query Frame = 3
Query:    3 KINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 650
            K+NKF+GMIEG IWSPR GD+N+QP+ W  E+GPHSDF GPTSG TACVA+I++  L VANAGDSRCVISRK QAYNLS+DHKPDLE EKERILKAGGFIHAGR+NGSLNL RAIGDMEFKQNKFL +EKQ+VTA+PDIN+++LCDDDDF+V+ACDGIWDCMSSQ+LVDFIHEQL SE+K+S VCE+V++RCLAP TA GEGCDNMT+I+VQFKKP
Sbjct:  117 KMNKFSGMIEGFIWSPRSGDTNNQPDSWPLEDGPHSDFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFIHAGRINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFKKP 332          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 4.684e-91
Identity = 158/216 (73.15%), Postives = 194/216 (89.81%), Query Frame = 3
Query:    3 KINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 650
            K  KFTGM+EG+IWSP+ G+S D+P D   EEGPHS F GPTSGSTACVAIIRN+ LIVANAGDSRCV+SRKG+AY+LS+DHKPDL+AEKERIL AGGFI AGRVNGSLNLARAIGDME KQN+FL AE+QIVTA P++N+V+L +DD+F+VLACDGIWDCMSSQ++VDF+H+++++E  +SAVCE++L+ CLAP  +GG+GCDNMT+IIV+FKKP
Sbjct:  117 KGQKFTGMLEGIIWSPKPGES-DKPEDTWTEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAGRVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAP-VSGGDGCDNMTVIIVKFKKP 330          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 96/180 (53.33%), Postives = 130/180 (72.22%), Query Frame = 3
Query:  120 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKKPI 653
            G  SG TA V +++   L VANAGDSRCVISR GQA  +S DHKP+ + E  RI+KAGG +   GRVNG LNL+RA+GD  +K N  L AE+Q+++A PDI  + +  +D+F+VLACDGIW+ MSS+++V+F+  +L    K+S +CE + + CLAP+T G G GCDNMT +IVQFKK +
Sbjct:  389 GKDSGCTAVVCLLQGRDLYVANAGDSRCVISRSGQAIEMSIDHKPEDDEEASRIIKAGGRVTLDGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFKKKL 568          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.151e-47
Identity = 98/183 (53.55%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  120 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 644
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  325 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 507          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.151e-47
Identity = 98/183 (53.55%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  120 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 644
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  324 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 506          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 97/183 (53.01%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  120 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 644
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ+++DFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  322 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 504          
BLAST of FC873175 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.247e-47
Identity = 97/183 (53.01%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  120 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 644
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  ++Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  321 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 503          
The following BLAST results are available for this feature:
BLAST of FC873175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
P2C60_ARATH3.229e-10884.26Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C58_ORYSJ7.192e-10883.41Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ2.733e-10783.87Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C21_ARATH2.394e-10379.17Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C70_ORYSJ4.684e-9173.15Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME3.396e-4953.33Probable protein phosphatase CG10417 OS=Drosophila... [more]
PPM1G_MACFA4.151e-4753.55Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN4.151e-4753.55Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN5.421e-4753.01Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PPM1G_MOUSE9.247e-4753.01Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873175 ID=FC873175; Name=FC873175; organism=Citrus clementina; type=EST; length=806bp
ATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCCA
AGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGGG
CCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTTG
CAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCGA
TGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACAA
ACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTTA
TACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGGT
GACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTGT
TACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGATT
TCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCAA
TTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTGC
TGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGAG
GTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACCA
ATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAATC
AGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTGT
AATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAGA
ACATGC
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