FC873223

Overview
NameFC873223
Unique NameFC873223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10136 contig Ccv1_Contig10136:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873223 vs. ExPASy Swiss-Prot
Match: MGDP1_MOUSE (Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.652e-25
Identity = 64/158 (40.51%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   54 VPRLVVFDLDYTLWPFYCEC--------------RSKR-EMPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 482
            +P+L VFDLDYTLWPF+ +               R +R +   LYP    +L  L+  G+ VA ASR+     AN  LE  ++   F+ +EI+     K  HF+R+H +TGVPF+ M+FFDDE+RNI  V ++GVT I + +G++L  L QGL  F++
Sbjct:    4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPG--SKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAK 159          
BLAST of FC873223 vs. ExPASy Swiss-Prot
Match: MGDP1_HUMAN (Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.464e-25
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   54 VPRLVVFDLDYTLWPFYCEC--------------RSKREMP-SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 482
            +P+L VFDLDYTLWPF+ +               R +R     LYP    +L  L+  G+  A ASR+   + AN  LE  ++   FV +EI+     K  HF+R+  +TG+PF+ M+FFDDE RNI  VSK+GVT I + NG+NL  L QGL  F++
Sbjct:    4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPG--SKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAK 159          
BLAST of FC873223 vs. ExPASy Swiss-Prot
Match: MGDP1_SCHPO (Putative magnesium-dependent phosphatase P8B7.31 OS=Schizosaccharomyces pombe GN=SPBP8B7.31 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.559e-17
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   57 PRLVVFDLDYTLWPFYCECR-------SKREMPSL----------YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK---SMFVAKEIFS---SW-SHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKF 476
            P+ VVFDLDYTLWP + +         SK +   L          Y    GIL  L+++ + + VASR+ +P  A   L  + +    S+  A E F+   +W   K DHF+ IH+ +G+ +  M+FFDDE RN + V ++GVT  LV +G+N  +  QG+ K+
Sbjct:    8 PKCVVFDLDYTLWPLWIDTHVTAPFKPSKNDPGVLIDKYGTEICFYSDITGILQELRNQKVTLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFFTYVKAWPGSKMDHFKEIHNESGIDYREMVFFDDESRNRE-VERLGVTFCLVPDGLNRASFEQGINKW 170          
The following BLAST results are available for this feature:
BLAST of FC873223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MGDP1_MOUSE2.652e-2540.51Magnesium-dependent phosphatase 1 OS=Mus musculus ... [more]
MGDP1_HUMAN3.464e-2541.77Magnesium-dependent phosphatase 1 OS=Homo sapiens ... [more]
MGDP1_SCHPO1.559e-1735.37Putative magnesium-dependent phosphatase P8B7.31 O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DE12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873223 ID=FC873223; Name=FC873223; organism=Citrus clementina; type=EST; length=813bp
GTGAAGAAAAAGTGATAGAAGAAGCGATGGGGATAATTGGAATGTTCCAA
GTTGTCCCTCGTTTAGTCGTTTTCGATCTTGATTACACTCTCTGGCCTTT
CTACTGTGAATGTCGCTCCAAACGTGAAATGCCATCTTTGTATCCTCATG
CTAAAGGCATATTACATGCTCTCAAGGACAAAGGGATTGATGTAGCTGTT
GCTTCTCGGTCGCCGAGCCCTGATATAGCAAACACTTTTCTCGAAAAATT
GAACATCAAGTCCATGTTTGTTGCAAAGGAGATTTTTTCCAGTTGGTCAC
ATAAGACCGATCACTTCCAGAGAATTCATTCTAGAACTGGAGTTCCTTTT
AACTCGATGCTCTTTTTTGATGATGAGGATCGGAACATTGATGCGGTTTC
AAAAATGGGGGTGACAGGCATTTTGGTTGGTAATGGGGTTAATCTTGGAG
CATTAAGGCAAGGTCTTACAAAATTCTCGCAAAACTGGAATACATCTCAG
AAGAACAAGCAAAAATGGATATCCAAGTTCTCTCAAAAGCCAGATGCATC
TGAGAAGATAGACCAGAAATGAAGAGCTCTGTATAAGGGCATTTGCTCAT
TCTTACACCAATTTAACACCCTGAAAATTGTTTCCATCGCTGTTGTGGAT
TATTTTGAAAATCCAGATCTGTTTATGAACTGATTAGTATTGTTTCTNCA
CGGTCAAAAAGAGTATGTTTTGGGCTGTTACCTTACAATATATACATTTT
ATACTGATTAAAATTTAAGAGTGACTTGTATGCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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