FC873233

Overview
NameFC873233
Unique NameFC873233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1088 contig Ccv1_Contig1088:111..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.028e-56
Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 2
Query:   47 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            MP+K   E+++ +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD++C G LKQ             +GSCCNFLT
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLT 187          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P   +P E    + + +   +N     L++I+ G  LK+             +G C NFLT
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLT 215          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.501e-28
Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P   +  E F  I + +   +N+A  +L+ I+ G  LK+             +G+  NFLT
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLT 194          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.710e-27
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P   +P E F  + +++   +N+A  +L+ I+ G  LK+             +G+  NFLT
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLT 194          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.810e-27
Identity = 52/144 (36.11%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I+ G  +K+             +G C +FLT
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLT 211          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27
Identity = 65/186 (34.95%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   68 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++I+ G  +K+             IGSC NFLT
Sbjct:    9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLT 194          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.226e-26
Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P   +P +V   + + +   +N    +L+DI+ G  LK+             +GS CNFLT
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLT 190          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCG 529
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D++CG
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACG 138          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.605e-17
Identity = 47/144 (32.64%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +    +P +      + +   +N A   L+ I+    +K              IG+  +FL+
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLS 193          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 42/144 (29.17%), Postives = 70/144 (48.61%), Query Frame = 2
Query:  179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D++ G   +              IGS  +  T
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCT 167          
The following BLAST results are available for this feature:
BLAST of FC873233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RTNLH_ARATH1.028e-5656.91Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH5.317e-2939.58Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH4.501e-2844.44Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.710e-2740.97Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH3.810e-2736.11Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH8.489e-2734.95Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH3.226e-2638.89Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH1.714e-1936.75Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.605e-1732.64Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH1.271e-1429.17Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AH11FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873233 ID=FC873233; Name=FC873233; organism=Citrus clementina; type=EST; length=612bp
TTCAACAGACCCCATTTTTTTCCTTTTTTCTTGAAAGATTGGAAGAATGC
CAGAGAAAATAACAGCAGAGAACATTTTGGACAACCTTGTGGAAACCATT
TCAGATAAGGTTCAAAAGCAGAAAGCTGTATCATTTTTTGAGGAAGAGAC
CTCAAGCTCAGTCACTGCTCGTTTCAATCGGCTGTTCGGACGCCAGAAAC
CTGTCCACCATCTTTTGGGCGGTGGAAAATCTGCTGATGTTTTGTTATGG
AGGAACAAGAAGATATCAGCCAGTGTATTAATGGGTGCAACAGCAATTTG
GGTGCTCTTTGAATGGCTTAACTACCATTTTCTGACCATTGTATGCTTTG
CTTTGGTCCTTGGCATGCTTGCTCAATTTTTTTGGGTAAACATTTCGGGC
TTATTTAACAGATCACCATCAAAAGTTCCCCGCTTTGTTCTGCCTCCAGA
GGTATTTGCTAACATTGGCACGACAGTTTGTGCTAATGTTAACGAAGCTC
TGGGGCTACTTCAGGACATTTCATGTGGAGGAAAACTGAAACAACTTCTT
GTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGCGATAGGGAGCTGTTGTAA
CTTTTTGACCGT
back to top