FC873233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.028e-56 Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 2 Query: 47 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 MP+K E+++ +LV+ ++ VQK K RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG NRS S+VPR VLP + FA +G V VN L LQD++C G LKQ +GSCCNFLT Sbjct: 1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLT 187
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29 Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 RLFGR++PVH +LGGGK AD+ +W+NKK+S VL GATA WV+FE + YH LT++C +++ + F W N + N+SP K+P +P E + + + +N L++I+ G LK+ +G C NFLT Sbjct: 72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLT 215
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.501e-28 Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 RLFGR+KPVH +LGGG ADV LWR+KK+SASVL ATAIWVLFE + YHFL++VC L+ + A F N N++P K+P + E F I + + +N+A +L+ I+ G LK+ +G+ NFLT Sbjct: 51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLT 194
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.710e-27 Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL ATAIWVLFE + YH L+++C +L + F W N L N++ ++P +P E F + +++ +N+A +L+ I+ G LK+ +G+ NFLT Sbjct: 51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLT 194
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.810e-27 Identity = 52/144 (36.11%), Postives = 84/144 (58.33%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 RLFGR++PVH +LGGGK AD+ +W++KK+S V GAT WVLFE + YH LT++C +++ + F W N + ++SP K+P +P E + + + +N + L++I+ G +K+ +G C +FLT Sbjct: 68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLT 211
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27 Identity = 65/186 (34.95%), Postives = 91/186 (48.92%), Query Frame = 2 Query: 68 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 E+IL+ +VE I S + + RLFGR+KPVH +LGGGK AD+ LWRNKK+S VL TA WVLFE YH L +C + + A F W N ++S +P +P + + + + +N L LL++I+ G +K+ IGSC NFLT Sbjct: 9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLT 194
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.226e-26 Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 RLFGR++P+H L GGGK AD+ LWRNKK+S VL AT W+LFE L Y+ LT+ +L + F W + S ++SP +P +P +V + + + +N +L+DI+ G LK+ +GS CNFLT Sbjct: 47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLT 190
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19 Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCG 529 +LF RQ+ +H + GGGK AD+LLWR KI+A++++G + +W L E + Y+F+T++C A + ML F W S N +P VL F + + N+ L L D++CG Sbjct: 22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACG 138
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.605e-17 Identity = 47/144 (32.64%), Postives = 74/144 (51.39%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 R+FGR++P+H +LGGGK ADVLLWR+KK++ +L T IW+LF + LT +C +L +L F W S N+SP + +P + + + +N A L+ I+ +K IG+ +FL+ Sbjct: 53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLS 193
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14 Identity = 42/144 (29.17%), Postives = 70/144 (48.61%), Query Frame = 2 Query: 179 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610 RL GRQ VH +GGGK+AD+LLWR + +S V++ +T W++FE+ FL++ L++ ++ F +S NR +P VL E+ + + +N L + D++ G + IGS + T Sbjct: 24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCT 167 The following BLAST results are available for this feature:
BLAST of FC873233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873233 ID=FC873233; Name=FC873233; organism=Citrus clementina; type=EST; length=612bpback to top |