FC873251

Overview
NameFC873251
Unique NameFC873251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.684e-26
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQXXXXXXXXXXXXXXXQRLT 237
            +RLGSIVHKKTASVLCLTTVKNEDK+EFSKILEAIKANFNDK++E+RKKWGGG+MGSKSQ               QR+T
Sbjct:  180 ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 180
            SRLG++VH+KTAS LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  179 SRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 238          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 180
            SRLG++VH+KTA+ LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  178 SRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 237          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +V +KT + L LTTV N DK  F K+LEA+K NFN+++EE+R+ WGGGI+GSKS
Sbjct:  193 ARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKS 251          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.822e-15
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 180
            +RLG+++H+KTA+VL +T V+ EDK E + I+ A+ ANF+ KY+E R+KWGGGIMG K+Q
Sbjct:  184 ARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQ 243          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +C T    ED+   +K++EAIK N+ND+YEE+R+ WGG IMG KS
Sbjct:  188 ARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKS 246          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T    EDK   +K++EAIK N+ND+YEE+R+ WGGGI+G KS
Sbjct:  188 ARLGRLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKS 246          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  188 ARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_ANOGA (60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 28/59 (47.46%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG++V++KT + + LT V+N DK   +K++E IK NFND+++++R+ WGGG++G KS
Sbjct:  194 ARLGTLVYRKTCTCVALTQVENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKS 252          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  188 ARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
The following BLAST results are available for this feature:
BLAST of FC873251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL7A_ORYSJ3.684e-2672.1560S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL7A1_ARATH1.829e-2590.0060S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A2_ARATH3.119e-2588.3360S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A_DROME7.700e-1659.3260S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL8_SCHPO3.822e-1556.6760S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL7A_ICTPU9.413e-1452.5460S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL7A_TAKRU3.577e-1352.5460S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A_BOVIN6.101e-1347.4660S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]
RL7A_ANOGA7.969e-1347.4660S ribosomal protein L7a OS=Anopheles gambiae GN=... [more]
RL7A_RAT1.041e-1247.4660S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873251 ID=FC873251; Name=FC873251; organism=Citrus clementina; type=EST; length=392bp
TCACGTTTGGGATCTATTGTCCACAAGAAGACAGCTTCTGTATTGTGTTT
GACAACAGTTAAGAATGAGGATAAGATGGAATTCAGCAAGATCCTTGAGG
CCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTTAAGAAAGAAGTGG
GGAGGTGGTATTATGGGCTCCAAATCACAGGCAAAAACCAAGGCCAAGGA
GAAACTTCTTGCCAAGGAAGCTGCTCAGAGGCTGACCTAGGATTTTGCTC
AGTCTTAAGAGAGTCCCAATGTTTTGTTATTTCTTGTGCTTTCATCATCT
TTTTATTTTAATGAACATGTTTCTATGTAGTCTCTTAGCATTTTACCTTA
TTAAGATTTTTAATTGAACTTCTGAAAAAAAAAAAAAAAAAA
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