FC873271

Overview
NameFC873271
Unique NameFC873271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..795. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 8.663e-87
Identity = 163/210 (77.62%), Postives = 177/210 (84.29%), Query Frame = 3
Query:  135 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            R SP G+L +R + Y               +  K  GGGKITDEFTG G++GQVCQVIGAVVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 240          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.930e-86
Identity = 162/210 (77.14%), Postives = 175/210 (83.33%), Query Frame = 3
Query:  135 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            RASPYG+LL+R +EY                     GGGKITDEFTGKG+IGQVCQVIGAVVDVRFDEGLPPILT+LEV+DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR        VIGEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   41 RASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 250          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.520e-86
Identity = 163/210 (77.62%), Postives = 178/210 (84.76%), Query Frame = 3
Query:  135 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            R SP G+L +R + Y               +   K GGGKITDEFTG G+IGQVCQVIGAVVDVRFDEGLPPILTALEV+D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEPIDEKGD+KT H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   33 RPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 241          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.208e-82
Identity = 161/213 (75.59%), Postives = 175/213 (82.16%), Query Frame = 3
Query:  135 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            RASP G LL+R  +Y               S   K G    GKITDEFTG GSIG+VCQVIGAVVDVRFDEGLPPILTALEV+D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   40 RASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 248          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.775e-74
Identity = 143/213 (67.14%), Postives = 168/213 (78.87%), Query Frame = 3
Query:  132 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            R A+P  +LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 244          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.775e-74
Identity = 143/213 (67.14%), Postives = 168/213 (78.87%), Query Frame = 3
Query:  132 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            R A+P  +LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 244          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.410e-74
Identity = 143/211 (67.77%), Postives = 167/211 (79.15%), Query Frame = 3
Query:  138 ASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            A+P G LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGK  L+  L
Sbjct:   41 AAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 247          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.410e-74
Identity = 135/174 (77.59%), Postives = 154/174 (88.51%), Query Frame = 3
Query:  243 GGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G G ITDE TG G+IGQVCQ+IGAVVDV+F+EGLPPI+TALEV+D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+NVIGEPID +G++KT+ YLPIHREAP FV+QATEQQILVTGIKVVDLLAPYQ+GGKIGLFGG  VGK  L+  L
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAPYQKGGKIGLFGGDWVGKTVLIMEL 239          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.260e-61
Identity = 117/159 (73.58%), Postives = 134/159 (84.28%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:   61 GQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 219          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.665e-61
Identity = 116/159 (72.96%), Postives = 134/159 (84.28%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:   61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 219          
The following BLAST results are available for this feature:
BLAST of FC873271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_ORYSJ8.663e-8777.62ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_HEVBR1.930e-8677.14ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE2.520e-8677.62ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_NICPL2.208e-8275.59ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBN_ARATH3.775e-7467.14ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH3.775e-7467.14ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH8.410e-7467.77ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBM_DAUCA8.410e-7477.59ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPB_RAT1.260e-6173.58ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_MOUSE3.665e-6172.96ATP synthase subunit beta, mitochondrial OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873271 ID=FC873271; Name=FC873271; organism=Citrus clementina; type=EST; length=784bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAACTGTGCT
TATTATGGAACTTATAACAATGTTGCAAGGCTCA
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