FC873288

Overview
NameFC873288
Unique NameFC873288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:107..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.324e-34
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PCTWS VICD+ N V S TLS MNFSGTL  ++G+L  L TLTLKGNGITGEIPE+ GNL+SLTSLDLE+N+L G+IP ++GNLKKLQFL
Sbjct:   58 PCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFL 147          

HSP 2 Score: 27.7202 bits (60), Expect = 1.324e-34
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  430 TLSQNNFSGTIPDSLTTL 483
            TLS+N  +GTIP+SLT L
Sbjct:  148 TLSRNKLNGTIPESLTGL 165          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.098e-18
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PCTW +V C+N N+V    L +   SG L P++GVL+ L  L L  N ITG IP  LGNL++L SLDL  N   G IP SLG L KL+FL
Sbjct:   57 PCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFL 146          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.445e-18
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PCTW +V C++ N+V    L + N SG L  ++G L  L  L L  N ITG IPE+LGNL+ L SLDL  N L G IP +LG LKKL+FL
Sbjct:   56 PCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFL 145          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PCTW +V C+N N+V    L + + SG L P++G L+ L  L L  N ITG +P +LGNL++L SLDL  N   G IP SLG L KL+FL
Sbjct:   60 PCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFL 149          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC+W +V C+  N+V    L S N SG L P++  L  L  L L  N ITGEIPEELG+L  L SLDL  N + G IP SLG L KL+FL
Sbjct:   58 PCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFL 147          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PCTW +V C+  N V    L +   SG L P++G L  L  L L  N ITGEIPEELG+L  L SLDL  N + G IP SLG L KL+FL
Sbjct:   63 PCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFL 152          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.611e-17
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   53 CTWSNVICDN-SNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            C+W  V CDN S +V S  LSS+N  G + P IG LR L ++ L+GN + G+IP+E+GN +SL  LDL  N L G IP S+  LK+L+ L
Sbjct:   59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETL 148          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.483e-15
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PCTW+ V C +   V S  ++S   SG L   IG L  L TL L+ N +TG IP ELG LS L +LDL  NR  G+IP SLG L  L +L
Sbjct:   67 PCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYL 156          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC W  + CD+S NVAS   +    SG L P+IG L++L  L L  N  +G IP  LGN + L +LDL  N    KIP +L +LK+L+ L
Sbjct:   63 PCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVL 152          

HSP 2 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N +++ +  + S N SGT+P  +G+L+ L+ L L  N ++G IP ELGN SSL  L L +N+LVG IP +LG L+KL+ L
Sbjct:  289 NCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESL 368          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   53 CTWSNVICDNSN-NVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            C W  V C+N   NV +  LS +N  G + P IG L++L ++ L+GN ++G+IP+E+G+ SSL +LDL  N L G IP S+  LK+L+ L
Sbjct:   56 CVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQL 145          

HSP 2 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   92 VASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            VA+ +L     SG +P  IG+++ L+ L L GN ++G IP  LGNL+    L L +N+L G IPP LGN+ KL +L
Sbjct:  261 VATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYL 336          
The following BLAST results are available for this feature:
BLAST of FC873288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
Y5129_ARATH1.324e-3472.22Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH1.098e-1852.22Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
BAK1_ARATH2.445e-1852.22BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK2_ARATH3.193e-1850.00Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK5_ARATH9.291e-1852.22Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH1.213e-1752.22Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
ERL1_ARATH4.611e-1748.89LRR receptor-like serine/threonine-protein kinase ... [more]
Y5457_ARATH1.483e-1548.89Probable LRR receptor-like serine/threonine-protei... [more]
PEPR1_ARATH2.530e-1544.44Leucine-rich repeat receptor-like protein kinase P... [more]
ERECT_ARATH5.637e-1544.44LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873288 ID=FC873288; Name=FC873288; organism=Citrus clementina; type=EST; length=535bp
GCGTGTTCCAAACAATCAACAAAAAGATTGAAATCAAAACCAAGTTAATC
CTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTTGCCTCT
GAAACATTGTCTTCCATGAACTTTTCTGGAACCTTGCCCCCAAAAATAGG
AGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCATAACTG
GTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGCTTGGAC
TTGGAAAACAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGGCAATCT
TAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTTCACTTT
TAATCTATATGGTTTTTCTTCACCTTTTTTCATGATCTGGCACCAAAAGT
CTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACAATTTT
AGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTTGATCAGTA
TTCAGCTGGATTCAAATAATCTCAATGGTCAAATT
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