FC873312

Overview
NameFC873312
Unique NameFC873312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   86 DSKNEEGLFPSNGNLR-SIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLP 292
            + KNE+G   S G ++ S+QREAAL KFR+KRKDRCY+KKVRYESRKKLAEQRPR+KGQFVRQV S   P
Sbjct:  489 EKKNEDGYSLSVGKIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQSTQAP 558          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 2
Query:   26 GSACGSNSNVDQVTAGRAAADSKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVH 277
            GS C S+SN        +    +N +GL   +      QREAALNKFRLKRKDRC++KKVRY+SRK LAEQRPRVKGQFVRQ H
Sbjct:  541 GSVCDSSSNHMIAPTESSNVVPENPDGLRHLS------QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQDH 618          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.095e-17
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   38 GSNSNVDQVTAGRAAADSKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 283
            GS S  + + AG++++  K +E         RS QREAAL KFRLKRKDRC+DKKVRY+SRKKLAEQRPRVKGQFVR V+S+
Sbjct:  384 GSQSTNEGI-AGQSSSTEKPKEEESAKQRWSRS-QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.523e-16
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 2
Query:   23 YGSACGSNSNVDQVTAGRAAADSKNEEGLFPSNG----NL----RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHSGNISD 328
            YGS+ G N+    + +   A  + N +G    +G    NL    +  QREAAL KFR KRK+RC+ KKVRY+SRKKLAEQRPRV+GQFVR+  + T     +N   NI D
Sbjct:  621 YGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAAT----DDNDIKNIED 726          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.982e-15
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  116 SNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 271
            S+G+ R  QREAAL KFRLKRK+RC++KKVRY SRKKLAEQRP VKGQF+R+
Sbjct:  433 SSGSDRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 2
Query:  131 RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVH 277
            RS +R AAL KFRLKRK+RC+DKKVRY +RKKLAE RPRV+GQFVRQ +
Sbjct:  439 RSERRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQAN 487          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  140 QREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHSGNISD 328
            +RE AL KFR KR  RC+DKK+RY +RK+LAE+RPRVKGQFVR+++   + L  +  S +  D
Sbjct:  532 RREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQPDSADYDD 594          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 42/80 (52.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   44 NSNVDQVTAGRAAADSKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 283
            N  VD+  AG               NG      REAALNKFR KRK R + KKVRY+SRK+LAEQRPR++GQFVRQ   E
Sbjct:  682 NGIVDENGAGGGNGSGSGSGNDLYQNG---VCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 42/80 (52.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   44 NSNVDQVTAGRAAADSKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 283
            N  VD+  AG               NG      REAALNKFR KRK R + KKVRY+SRK+LAEQRPR++GQFVRQ   E
Sbjct:  682 NGIVDENGAGGGNGSGSGSGNDLYQNG---VCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758          
BLAST of FC873312 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 48/102 (47.06%), Postives = 57/102 (55.88%), Query Frame = 2
Query:   26 GSACGSNSNVDQVTAGRA-------AADSKNEEGLFPSNGN----------LRSIQRE---AALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 271
            GS  GSN      TA  A       A  + N+ G    NG+           R  QRE   AA+ KFR KRK+R + KKVRY+SRK+LAEQRPRV+GQFVRQ
Sbjct:  623 GSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
The following BLAST results are available for this feature:
BLAST of FC873312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APRR5_ARATH6.204e-2171.43Two-component response regulator-like APRR5 OS=Ara... [more]
PRR95_ORYSJ6.420e-1859.52Two-component response regulator-like PRR95 OS=Ory... [more]
APRR9_ARATH1.095e-1762.20Two-component response regulator-like APRR9 OS=Ara... [more]
APRR7_ARATH3.523e-1647.27Two-component response regulator-like APRR7 OS=Ara... [more]
APRR3_ARATH2.982e-1575.00Two-component response regulator-like APRR3 OS=Ara... [more]
PRR1_ORYSJ7.345e-1475.51Two-component response regulator-like PRR1 OS=Oryz... [more]
APRR1_ARATH1.061e-1253.97Two-component response regulator-like APRR1 OS=Ara... [more]
PRR73_ORYSJ2.363e-1252.50Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI2.363e-1252.50Two-component response regulator-like PRR73 OS=Ory... [more]
PRR37_ORYSJ5.820e-1147.06Two-component response regulator-like PRR37 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873312 ID=FC873312; Name=FC873312; organism=Citrus clementina; type=EST; length=580bp
AAGTCGACTAATCAGCATGGGGTATGGAAGTGCTTGTGGAAGTAACAGTA
ATGTGGATCAGGTTACTGCTGGAAGGGCTGCTGCAGACAGCAAGAATGAA
GAAGGTTTATTCCCTTCCAATGGCAACTTGCGATCAATACAAAGAGAAGC
AGCTCTTAATAAGTTCCGGTTAAAGCGGAAAGACAGATGTTATGATAAGA
AGGTCCGGTACGAAAGTAGAAAAAAACTTGCAGAACAGCGTCCCAGAGTC
AAAGGACAATTTGTTCGTCAAGTACACTCCGAGACTCTACCCCTAGAATC
TGAGAATCACTCTGGCAATATATCAGATGGTTAGTGTATAAAAACATATC
ATAGTTAGAATGGGGATAGAATAGTATATGACTTAGATTAGGTTTACATT
TCTTATAGTGTTTGTGCTGACTTCAGATCCATGTTTGTTCGTATATATGT
AAATGACAGATAATACAATTATACAGTGTATCTTTTGTGACAGTAGCGTT
GTAACATATGTATTCCCATTTTTTTATTTATTTTGCAATGGAGCTGAGAG
AGTTTTCTGTAAAAAAAAAAAAAAAAAAAA
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