FC873321

Overview
NameFC873321
Unique NameFC873321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1103 contig Ccv1_Contig1103:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+M KMG++ G GLG D +GIV P++A  LPK R L AC
Sbjct:  299 KPTEKLGAWEEYTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPKGRSLDAC 355
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROMO (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila mojavensis GN=GI17578 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  298 KPTERLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 354
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROGR (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila grimshawi GN=GH11061 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  301 KPTEKLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 357
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROVI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  297 KPNERLGAWEQYTRGIGSKLMASMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 353
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROYA (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROME (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila melanogaster GN=CG4709 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROER (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila erecta GN=GG10072 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROPS (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila pseudoobscura pseudoobscura GN=GA18374 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+M KMG++ G GLG + +GIV P++A  LP+ R L AC
Sbjct:  298 KPTEKLGAWEQYTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDAC 354
[Close]
BLAST of FC873321 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROPE (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila persimilis GN=GL18949 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+M KMG++ G GLG + +GIV P++A  LP+ R L AC
Sbjct:  298 KPTEKLGAWEQYTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDAC 354
The following BLAST results are available for this feature:
BLAST of FC873321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ZGPAT_DROAN9.146e-1254.39Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROMO2.661e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROGR2.661e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROVI4.539e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROYA5.928e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROME5.928e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROER5.928e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROPS7.743e-1150.88Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROPE7.743e-1150.88Zinc finger CCCH-type with G patch domain-containi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BE06FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873321 ID=FC873321; Name=FC873321; organism=Citrus clementina; type=EST; length=672bp
AAGTGGCATATTGCAATCTGATAGTGTTGAGATCAGAACTGTTGATGCTG
TAGAGATAAATGAGACTTTTGAAAGTAAGGGTACAGTCAGCTCAACACAG
ATCGGTGCATTTGAGGTTCACACAAAGGGTTTTGGATCCAAGATGATGGC
AAAAATGGGATATGTAGAGGGGGGAGGATTAGGGAAGGATGGTCAAGGTA
TGTCTAAACCCATTGAAGCCATCCAACGGCCTAAGAAGCTTGGGCTGGGT
GTGGAATTTTCCAACACTGATGATGACTCGTCAAGAAAGGAATCTCGCAG
TGACTCGGCGAGGAAGGAATCTCGCAGTAACTCGGCGAAGAAGGGAGCTC
AAAACATTGGAGCTTTTGAAAAGCACACCAGAGGTTTTGGATCAAAGATG
ATGGCAAAGATGGGCTTTGTTGAAGGCATGGGCTTGGGCAGAGATTCCCA
AGGCATTGTCAACCCCTTGGCTGCTGTCAGGCTACCCAAATCACGAGGCT
TGGGCGCCTGTAGTTAGATGTTATGGTTATTGAAGTAGCAGAAAAGGGTA
AGGTGGTGTACCTTATAATCTATTGGAATTGAACATTTCGTACGTCCATT
ATTTCTAGGGGTATTTAAAATTCAATTCGATTCGATCAATTCATTTTATC
CGTAAAAAAAAAAAAAAAAAAA
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