FC873341

Overview
NameFC873341
Unique NameFC873341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: U424_DICDI (UPF0424 protein OS=Dictyostelium discoideum GN=DDB_G0277951 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.023e-16
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 2
Query:    2 DFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESGGGLSH 292
            DF +       QEW+L E+ +G + Y T+ +KF ++ ++TL+FP NFG  TT+I++I LKG  T  KR++V T VYE +P   DH  KS+   G+SH
Sbjct:  106 DFGNINSFACTQEWNLHEDFEGQIGYSTKPTKFNNINHLTLYFPSNFGSPTTKIYFIALKGVYTSAKREIVNT-VYESKPQLQDH--KSDIFNGVSH 199          
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: CA128_HUMAN (UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf128 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   11 DAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 259
            D  + +  Q + L  +L G LEY T+ S+F +V ++++H   NFG DTT++ YIGL+GE T+L+R  V    YE   NP+DH+
Sbjct:  117 DDTEREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELRRHEVTICNYEASANPADHR 199          
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: CA128_MOUSE (UPF0424 protein C1orf128 homolog OS=Mus musculus GN=Trp26 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.603e-13
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   11 DAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 259
            D  + +  Q + L  ++ G LEY T+ S+F +V ++++H   NFG DTT+I YIGL+GE T+L+R  V    YE   NP+DH+
Sbjct:  117 DDTEREPEQTFSLNRDITGELEYATKISRFSNVYHLSIHISKNFGADTTKIFYIGLRGEWTELRRHEVTICNYEASANPADHR 199          
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: U424_DROPS (UPF0424 protein GA19395 OS=Drosophila pseudoobscura pseudoobscura GN=GA19395 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 2
Query:    5 FSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESGGG 283
            F DA+ ++  QE++L  + +G +EY  +   F SV ++TL+FP NFG D T+I+YIGL+GE ++     V    YE R N +DHK K   G G
Sbjct:  116 FDDAK-VKVDQEFELTRDPRGEIEYSPKVVNFSSVHHLTLYFPSNFGDDKTRIYYIGLRGEFSEAHYHGVTICNYEARANAADHKDKVFDGVG 207          
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: U424_DROME (UPF0424 protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.664e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    5 FSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESGGG 283
            F DA+  +  QE+ L  + +G +EY  +   F SV +++L+FP NFG D T+I+YIGL+GE T+     V    YE R N +DHK K+  G G
Sbjct:  116 FDDAR-AKPDQEFQLTRDARGEIEYSPKVVTFSSVHHLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKEKAFDGVG 207          
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: CA128_XENLA (UPF0424 protein C1orf128 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   11 DAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 259
            D    +A Q + L  ++ G LEY T+ ++F +V+++++H   NFG + T+I+YIGL+GE T+  R  V    YE   NP+DHK
Sbjct:  115 DDTGREADQTFSLNIDVNGNLEYPTKIARFSNVSHLSIHISKNFGAENTKIYYIGLRGEWTEAHRHEVTICNYEAAANPADHK 197          
BLAST of FC873341 vs. ExPASy Swiss-Prot
Match: CA128_DANRE (UPF0424 protein C1orf128 homolog OS=Danio rerio GN=zgc:77241 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 30/78 (38.46%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   35 QEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKS 268
            Q + L  + +  LEY T+ ++F +V ++++H   NFG ++T+++YIGL+GE T+  R  V    YE   NP+DHK +S
Sbjct:  124 QAFRLNRDPRAELEYPTKIARFSNVEHLSIHVSRNFGAESTRVYYIGLRGEYTEAHRHEVTICNYEAAANPADHKVES 201          
The following BLAST results are available for this feature:
BLAST of FC873341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
U424_DICDI2.023e-1643.30UPF0424 protein OS=Dictyostelium discoideum GN=DDB... [more]
CA128_HUMAN1.227e-1342.17UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf1... [more]
CA128_MOUSE1.603e-1342.17UPF0424 protein C1orf128 homolog OS=Mus musculus G... [more]
U424_DROPS2.094e-1341.94UPF0424 protein GA19395 OS=Drosophila pseudoobscur... [more]
U424_DROME4.664e-1341.94UPF0424 protein CG6153 OS=Drosophila melanogaster ... [more]
CA128_XENLA5.157e-1239.76UPF0424 protein C1orf128 homolog OS=Xenopus laevis... [more]
CA128_DANRE5.701e-1138.46UPF0424 protein C1orf128 homolog OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BF08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873341 ID=FC873341; Name=FC873341; organism=Citrus clementina; type=EST; length=513bp
TGACTTCTCAGATGCTCAAGATATGCAAGCTATTCAGGAATGGGATTTGG
TTGAGAATTTGCAAGGAGTGTTAGAATACCAAACAAGGTATTCCAAATTT
CAAAGTGTGGCCAATATCACATTACACTTCCCTGACAATTTTGGTGGTGA
CACAACTCAGATACACTACATTGGCCTAAAAGGGGAAGCCACCCAGTTGA
AGAGGGACGTCGTGGCAACAATTGTTTATGAGCTGAGGCCGAATCCCTCC
GACCACAAAACAAAGTCTGAAAGCGGCGGTGGTCTTTCGCATGTGGAGTG
AACAATTTCATGTTCTCTATCAAGGTTTATCACTTTAATGTACTTCCAAA
TTCTGATAATAGAAGAACTATACAAGCTTCAAGAATTGTTGCCAAACTGC
TTTCTTTCTGGGTGGCATTACTTAGTGTTGCAACCAGCTAATGTGATGCT
TGTAAATTCATAATTATTGGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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