FC873343

Overview
NameFC873343
Unique NameFC873343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1123 contig Ccv1_Contig1123:53..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873343 vs. ExPASy Swiss-Prot
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.052e-41
Identity = 83/118 (70.34%), Postives = 94/118 (79.66%), Query Frame = 2
Query:   14 KEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQDYPA 367
            +E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN                  GHRQPNTRIRITGITGY++YPA
Sbjct:   92 EEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209          
BLAST of FC873343 vs. ExPASy Swiss-Prot
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.591e-40
Identity = 84/120 (70.00%), Postives = 94/120 (78.33%), Query Frame = 2
Query:   23 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQDYPAVTLDS 382
            P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+VTNAAVHAVVEEQ L+                  GHRQP TRI+ITGITGY+DYPA TL++
Sbjct:  118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237          
BLAST of FC873343 vs. ExPASy Swiss-Prot
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   32 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQ 355
            E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A VHAVVEE  L+                  GHRQ  T++RIT I G +
Sbjct:  138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245          
BLAST of FC873343 vs. ExPASy Swiss-Prot
Match: RM21_DICDI (Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 44/117 (37.61%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   23 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQDYPAVT 373
            P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+KVLLVGTK  T IGKP+++N  VHA +EEQ                     G +   T IRI GI   Q+    T
Sbjct:   56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGIIKGQETTTTT 171          
The following BLAST results are available for this feature:
BLAST of FC873343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RK21_ARATH1.052e-4170.3450S ribosomal protein L21, chloroplastic OS=Arabid... [more]
RK21_SPIOL2.591e-4070.0050S ribosomal protein L21, chloroplastic OS=Spinac... [more]
RM21_ARATH1.807e-1742.5950S ribosomal protein L21, mitochondrial OS=Arabid... [more]
RM21_DICDI6.651e-1237.61Probable 39S ribosomal protein L21, mitochondrial ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BF12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873343 ID=FC873343; Name=FC873343; organism=Citrus clementina; type=EST; length=568bp
TGAGTCCGCTGCCAAAGAAGAGCCCAAGCGCGAGGAGATTTTTGCTGTCG
TTATGATTGGGTCACGCCAATATATTGTCTTTCCTGGGCGATTTATCTAC
ACTCAGAGGCTTAAAGGTGCTAATGTCAATGATAAGATTATTTTGAACAA
GGTGTTGCTTGTAGGCACAAAAACAACTACCTATATCGGAAAACCTGTGG
TCACTAATGCTGCTGTACATGCAGTTGTCGAGGAGCAAGGTTTAAACCCC
AAAGTAATTGTCTTCAAGTATAAGAAGAAAAAGAACTATCGGAGGAATAT
CGGCCACCGACAGCCAAATACGCGGATAAGGATAACTGGCATCACTGGCT
ATCAAGACTATCCGGCAGTCACACTTGATTCACTAAAATCTGTTCAATAG
GTTCTAGCACTGAAGTCTTTTTCTGCTTTTCATGTATGTGATTTACCTTC
CCTAGTTACATGTTCGGATTGAGTTATGCACTTATGGGAATCAATTTTTG
TCACATTGACTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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