FC873369

Overview
NameFC873369
Unique NameFC873369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1209 contig Ccv1_Contig1209:3..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873369 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.470e-34
Identity = 87/202 (43.07%), Postives = 116/202 (57.43%), Query Frame = 2
Query:  218 DATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEYFSPRDAVGHGTHTAST 823
            D   N++IVYMG +K EDP +    H   L  V+GS  A + S+L++YK  F+GFA +LT+ +AEKIA + GVV V  N + +LHTTRSW+F+G       ++   ESN+            +WPES SF D+G   +P PP WKG C   E  N+  CNRK+IGAR +       I    +  +   PRD  GHGTHTAST
Sbjct:   28 DDGKNIYIVYMG-RKLEDPDSAHLHHRAMLEQVVGSTFAPE-SVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRS-QVESNI----VVGVLDTGIWPESPSFDDEGF--SPPPPKWKGTC---ETSNNFRCNRKIIGARSY------HIGRPISPGDVNGPRDTNGHGTHTAST 211          
BLAST of FC873369 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.792e-30
Identity = 74/196 (37.76%), Postives = 114/196 (58.16%), Query Frame = 2
Query:  236 HIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEYFSPRDAVGHGTHTAST 823
            +IV+M   K + P +     + + S++    ++A+  +LY+Y++   GF+ RLT+ +A+ +   PGV+ V+P    +LHTTR+  F+GL   + + +L  E+              VWPES+S+SD+G G  P+P  WKG C+ G  F +S CNRKLIGAR+F +G    +     + E  SPRD  GHGTHT+ST
Sbjct:   32 YIVHMA--KSQMPSSFDLHSNWYDSSLRSISDSAE--LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLD--EHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFG--PIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSST 219          
BLAST of FC873369 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.221e-25
Identity = 74/196 (37.76%), Postives = 109/196 (55.61%), Query Frame = 2
Query:  236 HIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEYFSPRDAVGHGTHTAST 823
            +I+Y+G++       I K+H   LS++  S+E AK   +YSY   F+ FAA+L+  +A+K+ E+  VV V  N   KLHTT+SW+F+GL    + ++L  E ++            + P+SESF D G+G  P P  WKG C  G   N + CN K+IGA++F        + +    E  SP D  GHGTHT+ST
Sbjct:   38 YIIYLGDRPDNTEETI-KTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLP-LTAKRHLKAERDV----IIGVLDTGITPDSESFLDHGLG--PPPAKWKGSC--GPYKNFTGCNNKIIGAKYF------KHDGNVPAGEVRSPIDIDGHGTHTSST 217          
The following BLAST results are available for this feature:
BLAST of FC873369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CUCM1_CUCME5.470e-3443.07Cucumisin OS=Cucumis melo PE=1 SV=1[more]
SUBL_ARATH4.792e-3037.76Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
XSP1_ARATH1.221e-2537.76Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AD08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873369 ID=FC873369; Name=FC873369; organism=Citrus clementina; type=EST; length=824bp
GAAGATCTAATAGAAGAGCTAACTTATGAACATTCCCATTTTTCATTGAA
CAATTGAAACTCTGTCTAGCACAAAATCCTCCGCACGTTTCCATGTGCTT
TGCTGATTGATATATATTGTATCAAGAAACAGAATGGAGGCAAGAAAAAC
TCAGTTGCTGAGAATTCTTGTCGTCATTCTGCTCCAACACCATCTTCAGA
TTTCCTTAATATTGGTTGATGCAACAAGTAATGTGCACATTGTGTATATG
GGAGAGAAGAAGTATGAAGATCCAGTAGCCATCACAAAGTCTCACCACAG
ATTTCTATCAACCGTGCTTGGAAGCAAAGAAGCAGCAAAGCATTCAATTC
TATACAGCTATAAACATGGGTTTTCAGGGTTTGCTGCAAGGCTAACAAAA
ACTCAGGCAGAAAAGATAGCAGAACTTCCTGGGGTTGTTCAAGTAATTCC
CAATGGAATTCTTAAGCTTCATACAACCAGAAGCTGGGAATTCATGGGGC
TCCACTATTATCAGTCTTCAAAAAATCTATCAACAGAGAGCAACATGGGT
GAAGGTACCATCATTGGTATCATTGATACAGGAGTTTGGCCAGAGTCTGA
AAGTTTCAGTGATAAAGGCATGGGTCAAGCTCCAGTTCCACCACATTGGA
AAGGAATATGCCAAAAGGGAGAGAAGTTCAACTCTTCCAATTGCAACAGA
AAGTTAATTGGTGCTCGGTGGTTCATAAAAGGGATCATGGATATGATCAA
TGCATCCACTAACACTGATGAGTATTTTTCTCCAAGGGATGCAGTTGGAC
ACGGCACTCATACAGCATCTACAG
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