FC873396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 1.560e-57 Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 2 Query: 101 NKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 457 NKDKDKDKK+PISRS+RAGIQFPVGRIHR LK+R++AHGRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTK+ Sbjct: 18 NKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 8.014e-54 Identity = 107/118 (90.68%), Postives = 114/118 (96.61%), Query Frame = 2 Query: 107 DKDKDKKR-PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 457 DKDKDKK+ P+SRSSRAG+QFPVGRIHR LKSR +AHGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+K+ Sbjct: 21 DKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.978e-53 Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 2 Query: 107 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 457 +KD KK+ ISRSSRAGIQFPVGRIHR LK R++AHGRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK TKD Sbjct: 20 NKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53 Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 2 Query: 107 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 457 DKDKDKK+PI+RSSRAG+QFPVGR+HR LK+R AHGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+ K+ Sbjct: 18 DKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 6.785e-53 Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 2 Query: 107 DKDKDKKR-PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 457 DKDKD+K+ P+SRSSRAGIQFPVGRIHR LK R++A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT K+ Sbjct: 22 DKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.280e-51 Identity = 102/117 (87.18%), Postives = 110/117 (94.02%), Query Frame = 2 Query: 107 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 457 +KDK KK P+SRSSRAG+QFPVGRIHR LK R A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++K+ Sbjct: 21 EKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3) HSP 1 Score: 193.356 bits (490), Expect = 1.324e-48 Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLKSR +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKTKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2) HSP 1 Score: 193.356 bits (490), Expect = 1.324e-48 Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS+RAG+QFPVGRIHRHLKSR +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3) HSP 1 Score: 192.971 bits (489), Expect = 1.729e-48 Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLKSR +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2) HSP 1 Score: 192.971 bits (489), Expect = 1.729e-48 Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLKSR +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121 The following BLAST results are available for this feature:
BLAST of FC873396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 242
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873396 ID=FC873396; Name=FC873396; organism=Citrus clementina; type=EST; length=819bpback to top |