FC873428

Overview
NameFC873428
Unique NameFC873428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10153 contig Ccv1_Contig10153:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.338e-23
Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHGV*QNRGPL 785
            F L DLE AT +F+   +LGEGG+G VY G + NGTEVAVK L  N    ++EF  EVE +  + H+NLV+L+G CIEG  R LVYE V  G++E  LHG  +  G L
Sbjct:  171 FTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNL 278          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.989e-23
Identity = 58/105 (55.24%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  447 LSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDN-GTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            ++  TFA  +L  AT  F     LGEGGFG VY G +D+ G  VAVK L RN   G+REF+ EV MLS LHH NLV LIG C +G  R LVYE +P GS+E HLH
Sbjct:   69 IAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLH 173          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  459 TFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            TF  S+L+ AT+ F     LGEGGFG VY G +++G EVAVKLL+  ++ G  +F+AE+  +S + HRNLVKL G C EG  R LVYE +P+GS++  L G
Sbjct:  680 TFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFG 780          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.825e-22
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            + L +LE AT     + ++GEGG+G VY G++ +GT+VAVK L  N    ++EF  EVE++ R+ H+NLV+L+G C+EG  R LVY+ V +G++E  +HG
Sbjct:  142 YTLRELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHG 241          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            K F  S++ + T+ F  +R+LG+GGFG VYHG +    +VAVK+L++++  G +EF AEV++L R+HH NLV L+G C EG    LVYE +P+G ++ HL G
Sbjct:  552 KRFTYSEVVQVTKNF--QRVLGKGGFGMVYHGTVKGSEQVAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLALVYEFLPNGDLKQHLSG 651          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.189e-21
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVE 746
            F L  +  AT++FSS+  LG+GGFG VY G + NG EVAVK LT+ +  GD EF  EV +L+RL HRNLVKL+G C EG  + LVYE VP+ S++
Sbjct:  341 FDLGMVLAATDEFSSENTLGQGGFGTVYKGTLLNGQEVAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLD 435          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK14_ARATH (Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana GN=CRK14 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.189e-21
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            F    +E AT KFS   I+G GGFG V+ GV+ NGTEVA+K L++ ++ G REF  EV ++++LHHRNLVKL+G C+EG  + LVYE VP+ S++  L
Sbjct:  325 FDFKAIEDATNKFSESNIIGRGGFGEVFMGVL-NGTEVAIKRLSKASRQGAREFKNEVVVVAKLHHRNLVKLLGFCLEGEEKILVYEFVPNKSLDYFL 421          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.859e-21
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            K F  S++E  T+ F  +R+LGEGGFG VYHG+++    +AVKLL++++  G +EF AEVE+L R+HH NLV L+G C E     L+YE  P+G ++ HL G
Sbjct:  561 KRFTYSEVEALTDNF--ERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHLSG 660          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.859e-21
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVE 746
            F L  +  AT+ FSS+  LG+GGFG VY G   NG EVAVK LT+ +  GD EF  EV +L+RL H+NLVKL+G C EG    LVYE VP+ S++
Sbjct:  336 FDLGMIVMATDDFSSENTLGQGGFGTVYKGTFPNGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSLD 430          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEV-AVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHGV*QNRGPL 785
            +TF   +L +AT  F S   LGEGGFG V+ G ++   +V A+K L RN   G REF+ EV  LS   H NLVKLIG C EG  R LVYE +P GS+E HLH +   + PL
Sbjct:   89 QTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPL 199          
The following BLAST results are available for this feature:
BLAST of FC873428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
Y2296_ARATH2.338e-2350.93Probable receptor-like protein kinase At2g42960 OS... [more]
PBS1_ARATH3.989e-2355.24Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y5614_ARATH5.760e-2250.50Probable LRR receptor-like serine/threonine-protei... [more]
Y1154_ARATH9.825e-2245.00Probable serine/threonine-protein kinase At1g01540... [more]
RLK7_ARATH1.283e-2147.06Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
CRK39_ARATH2.189e-2154.74Putative cysteine-rich receptor-like protein kinas... [more]
CRK14_ARATH2.189e-2152.04Cysteine-rich receptor-like protein kinase 14 OS=A... [more]
Y2289_ARATH2.859e-2148.04Probable LRR receptor-like serine/threonine-protei... [more]
CRK40_ARATH2.859e-2153.68Cysteine-rich receptor-like protein kinase 40 OS=A... [more]
RLCK7_ARATH8.317e-2149.55Probable serine/threonine-protein kinase RLCKVII O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873428 ID=FC873428; Name=FC873428; organism=Citrus clementina; type=EST; length=787bp
TTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGAAA
GTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATCAG
CTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAGTG
GTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAAAT
AAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCTGC
ATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAAAT
GGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCATCA
TCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATTGC
TAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCTCT
CTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAATTC
AGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCATGG
TGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAATA
ATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCAGA
TTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGACG
CACGCGCTGCTTGGTGTATGAACTTGTTCCACATGGCAGTGTTGAGTCAC
ACCTGCATGGTGTTTGACAGAATAGAGGACCTCTTGA
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