FC873445

Overview
NameFC873445
Unique NameFC873445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1114 contig Ccv1_Contig1114:1..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.353e-71
Identity = 117/241 (48.55%), Postives = 166/241 (68.88%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            +L +DYP+ +DGL++W AI TWV +YC+ +Y +D +V++D EIQ+WW E+R  GHGDKR+ SWW  M +RD+LI+  TI+IW +SALHA+VNFGQY YAG+ PNRPT+ R+F+P+ GT E+AEL  D+D  +LK +  +    L  +++E+LS H++DE+YLGQR S  WT D                    I+ RN + R KNR GP  I Y L++P+T++   +GG+TG GIPNS+SI
Sbjct:  646 LLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMPEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.438e-70
Identity = 121/241 (50.21%), Postives = 161/241 (66.80%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            +L  DYPY +DGL++W AI +WV DYCS +Y  ++ +  D E+QAWWKE+REVGHGDK+N  WW EM +   LI + T +IW +SALHA+VNFGQY YAGY PNRPT+ RKF+P+ GT E+ EL  + DK +LK +  +    L  +L+E+LSRHT+DE+YLGQR+S EWT D+                 ++I++RN N  L NR GP    Y L+ P      ++GGLTG GIPNS+SI
Sbjct:  625 LLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMPEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 860          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.571e-70
Identity = 121/241 (50.21%), Postives = 162/241 (67.22%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            +L +DYPY +DGL++W AI +WV DYCS +Y  D+ +  D E+QAWWKE+REVGHGDK+N  WW EM +   LI + T +IW +SALHA+VNFGQY YAGY PNRPT+ R+F+P+ GT E+ EL  + DK +LK +  +    L  +LVE+LSRHT+DE+YLGQR+S EWT D+                 ++I++RN +  L NR GP    Y L+ P      ++GGLTG GIPNS+SI
Sbjct:  626 LLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.888e-66
Identity = 111/241 (46.06%), Postives = 164/241 (68.05%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            ++ +DYPY +DGL++W  I TWV+DY S++Y  D+ ++ D E+QAWWKE+ EVGHGDK+N  WW +M +R++LI+  +I+IWT+SALHA+VNFGQY+Y G   NRPTL R+F+P++G+ EF EL+    K YLK +  +F   +  +++E+LSRH SDE+YLG+R +  WT D+                 +K+ +RN + +L+NR GP ++ Y L++P +       GLT  GIPNSISI
Sbjct:  626 LVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSRRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE-----GLTFRGIPNSISI 861          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.478e-65
Identity = 114/242 (47.11%), Postives = 161/242 (66.53%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDG-GLTGXGIPNSISI 723
            +L +DYPY  DGL +W AI  WV +YC+I+Y +D  ++ D E+QAWWKE+REVGHGD ++A WW +M S   L +A T +IW +SALHA+VNFGQY YAGY PNRPT+ R+ +P+ G+ E+ EL  + +K++++ +  +F   L  +L+E+LS+H++DE+YLGQR + EWT D                   K++  N++  LKNR GPA   Y LM P+TS+ K    G+T  GIPNSISI
Sbjct:  622 LLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPMPEPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.930e-65
Identity = 115/238 (48.32%), Postives = 161/238 (67.65%), Query Frame = 1
Query:   10 QDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            +DYPY +DGL+VW AI +WV+DY  +FYK ++ +++D E+QAWWKE+RE GHGDK++  WW +M +R+ L+++ TI+IW +SALHA+VNFGQY  AGY PNRPT+ R+++P E T EF EL  + DK +LK +  +    L  +L+E+LS H+SDEVYLGQR S EW  ++                 + I ERN +  LKNR G  K+ Y L+ P      ++GG+TG GIPNS+SI
Sbjct:  627 KDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEELEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFP-----SSEGGVTGRGIPNSVSI 859          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.108e-64
Identity = 116/246 (47.15%), Postives = 165/246 (67.07%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELL---IDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKND--GGLTGXGIPNSISI 723
            +L +DYPY +DGL +W AI  WV +Y +I+Y +D  ++ DEE+QAWWKE+REVGHGD ++  WW +M++   L +A TI+IW +SALHA+VNFGQY YAG+ PNRPT+ R+ +P+ GT E+A+L     ++D  ++  +  +F   L  +L+E+LS+H+SDEVYLGQR + EWT D                   +I + N N+ LKNR GP K+ Y L++P+TS+V  +   GLT  GIPNSISI
Sbjct:  632 LLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRPMPEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.059e-63
Identity = 112/241 (46.47%), Postives = 159/241 (65.98%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            ++ +DYPY +DGL++W AI TWV +Y  ++YK DD+++ D E+QA WKE+ EVGHGDK+N  WW +M +R+ L++A  I+IWT+SALHA+VNFGQY Y G   NRPTL R+F+P++G+ E+ EL  +  K YLK +  +F   +  +++E+LSRH SDEVYLG+R +  WT D                   K+ ERN + +L+NR GP ++ Y L+ P +       GLT  GIPNSISI
Sbjct:  622 LVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE-----GLTFRGIPNSISI 857          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.806e-63
Identity = 109/241 (45.23%), Postives = 156/241 (64.73%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGXGIPNSISI 723
            +L +DYPY +DGL++W AI TWV+DY S++Y  D+ +K+D E+Q WWKE+ E GHGD ++  WW ++ + D L++  TI+IWT+SALHA+VNFGQY Y G   NRPTL R+ +P+EGT E+ E++  S K YL+ +  +F   +  +++E+LSRH SDEVYLGQR++  WT D                   K+  +N +  L +R GP ++ Y L+HP +       GLT  GIPNSISI
Sbjct:  629 LLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAEYDEMVKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE-----GLTFRGIPNSISI 864          
BLAST of FC873445 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 6.863e-63
Identity = 111/242 (45.87%), Postives = 159/242 (65.70%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKND-GGLTGXGIPNSISI 723
            +L +DYPY  DGL VW AI  W  +Y +I+Y +D  ++ D E+QAWWKE+REVGHGD ++A+WW EM +   L++A   +IW  SALHA+VNFGQY YAGY PNRP++ R+ +P+ GT E+ EL  D +K +++ + ++    +  +L+E+LS+H+SDEVYLGQR + EWT D                   ++V  N++   KNR GP    Y L++P+TS++K D  GL+  GIPNSISI
Sbjct:  629 LLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPEWTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870          
The following BLAST results are available for this feature:
BLAST of FC873445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX5_ARATH2.353e-7148.55Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXA_SOLLC4.438e-7050.21Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU7.571e-7050.21Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX3_PEA3.888e-6646.06Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_ORYSJ1.478e-6547.11Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_ARATH1.930e-6548.32Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX4_ORYSJ8.108e-6447.15Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX3_SOYBN1.059e-6346.47Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_PEA1.806e-6345.23Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX2_ORYSJ6.863e-6345.87Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CC08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873445 ID=FC873445; Name=FC873445; organism=Citrus clementina; type=EST; length=794bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGANAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AACTATTAAGCGCTTCTGGGTGTAAAAAAAAAAAAAAAAAAAAA
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