FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.817e-41
Identity = 74/106 (69.81%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            GTPY+GGIFFLDI FP+DYPFKPPK+ F TRIYHCNVD+AG+++++IL+DSWSPALTITKVL A+RS+F  P  ++P +P IA LYL D+ KHD++A EWTLRFAK
Sbjct:   77 GTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFAK 182          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PY GG+FFL I FPTDYPFKPPKV F TRIYH N++S G++ LDIL+D WSPALTI+KVLL++ SM T+P+   P+VP IAH+Y  D+A+++  A EWT ++A
Sbjct:   43 SPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.767e-33
Identity = 63/105 (60.00%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            G+ Y+GG+FFLDITF +DYPFKPPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ +  +P+V  IA  YL ++A+HD++A +WT R+A
Sbjct:  102 GSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.767e-33
Identity = 63/105 (60.00%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            G+ Y+GG+FFLDITF +DYPFKPPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ +  +P+V  IA  YL ++A+HD++A +WT R+A
Sbjct:  102 GSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.767e-33
Identity = 63/105 (60.00%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            G+ Y+GG+FFLDITF +DYPFKPPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ +  +P+V  IA  YL ++A+HD++A +WT R+A
Sbjct:  102 GSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K+++LA EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 62/104 (59.62%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PY GG+FFL I FPTDYPFKPPKV F T+IYH N++S+GN+ LDILKD WSPALT++KVLL++ S+ T+ +  +P+VP IA +Y  DKAK++  A EWT ++A
Sbjct:   44 SPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYA 147          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ +++QLA EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF T+IYH N++S G++ LDIL+  WSPALT++KVLL++ S+  +P+  +P+VP IAH Y  D+ K+++LA EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.969e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PY GG+FFL I FPTDYPFKPPKV F TRIYH N++S G++ LDIL+D WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  D+++++  A EWT ++A
Sbjct:   43 SPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
COP10_ARATH8.817e-4169.81Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC1_COLGL3.967e-3360.58Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2E3_MOUSE6.767e-3360.00Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN6.767e-3360.00Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN6.767e-3360.00Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBCD1_DROME1.154e-3259.62Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC5_YEAST1.154e-3259.62Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_CAEEL1.154e-3259.62Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D4_HUMAN1.154e-3258.65Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC4_SCHPO1.969e-3258.65Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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