FC873464

Overview
NameFC873464
Unique NameFC873464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 77/225 (34.22%), Postives = 125/225 (55.56%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 671
            + G K+ F ND+    DG  +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    IK ++    KLFS+   +      + ++ V++ G   R+L DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct:  152 IEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 74/225 (32.89%), Postives = 127/225 (56.44%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 671
            + G K+ F ND+    DG  +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+V E    R R++++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +  L+    +K V+    KLFS+   +      + ++ +++ GT +R+L DP GQ++++V+   +   HLY+ S  + ++ +++L
Sbjct:  191 IEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 75/225 (33.33%), Postives = 124/225 (55.11%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 671
            + G K+ F ND+    DG  +YFT SSSK+   +Y L ++E    G+LL+YD  +    ++ D   F NGV LS +ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    IK ++    K+FS+   +      + ++ V++ G   R+L DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct:  191 IEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 74/224 (33.04%), Postives = 122/224 (54.46%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFIT--LGGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 671
            + G KL F ND+    DG  +YFT SSSK+   ++   ++EG   G+LL+YD  +    ++  G  F NGV LS  ED+V+V E+   R R+Y++ G  KG  + F EN+PG PDNI L+  G +W+A+  +        +  L+    IK ++  +  L    +T  L   + ++ ++E G+  R+  DPTG  + +V+   + + +LY+ S  S FI ++ L
Sbjct:  191 IEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMI--FKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 412          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 74/226 (32.74%), Postives = 123/226 (54.42%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQLS 674
            V G +L F ND+    DG  +YFT SSS++   +Y   I+E    G++L+YD  +   T++ +   FANG+ L  DE+ V+V E+   R R+  + G  KG ++TF +NLPG PDNI  +  G +W+A+  +        +  L+    IK ++    KLFS+ + +      + +I + E G  +R+  DP G + ++V+   + D HLY+ S  S ++ K+ LS
Sbjct:  192 VGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF---KLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 71/225 (31.56%), Postives = 120/225 (53.33%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 671
            + G  + F ND+    DG  +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+ +  +        +  L+    IK ++    KLFS+   +      + ++ +++ G   R+L DP G + ++++   + D HLY+ S  S F+ ++ L
Sbjct:  192 IEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIF---KLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 68/226 (30.09%), Postives = 119/226 (52.65%), Query Frame = 3
Query:   21 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQLS 674
            + G +L F ND+    DG  +YFT SSS++   ++   I+E    G++L+YD  +    ++ +   F NG+ L  DE+ V+V E+   R ++  + G  KG ++TF ENLPG PDNI  +  G +W+A+  +        +  L+    +K ++    KLFS+   L      + ++ +  DGT +R+  DP G + ++ +   +   HLY+ S  S ++ K+ LS
Sbjct:  191 IAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIF---KLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 3
Query:   21 VNGSKLRFANDV-VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI-NLAPDGTFWIAII 407
            V+G   +F + + V+ + G +YFT  SS++ P +  + +      G+L KYDPS+ + T++ +G   + G A+S D  +V+V +  K   ++YW+KG + G  E F  ++   PDNI  +   G FW+A +
Sbjct:  137 VDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVASV 266          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = 3
Query:   21 VNGSKLRFANDV-VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI-NLAPDGTFWIAII 407
            V G    F + + V+ + G +YFT  SS + P +    +      G+  KYDPS  + T++ +G   + G A+S D  +V+V +  K   ++YW+KG + G  E F  ++   PDNI  +   G FW+A +
Sbjct:  139 VGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASV 268          
BLAST of FC873464 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 3
Query:   57 VEASDGSLYFT-VSSSKYLPHEYCLDILEGKPH-GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 401
            V+   G +YFT VSS      E   +I+      G+L+KYDPS+  TTL+    +   G  +S D  +VVV E    R  KYWL+G +KG  E F   +P  P NI    DG FW++
Sbjct:  159 VDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAE-FLVTIPN-PGNIKRNSDGHFWVS 273          
The following BLAST results are available for this feature:
BLAST of FC873464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
APMAP_RAT1.506e-2934.22Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN1.968e-2932.89Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_MOUSE7.477e-2933.33Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_CHICK3.141e-2733.04Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_SALSA5.358e-2732.74Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_HUMAN4.536e-2631.56Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_DANRE9.458e-2430.09Adipocyte plasma membrane-associated protein OS=Da... [more]
STS1_ARATH3.050e-1432.06Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STS3_ARATH5.751e-1331.30Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STSY_CATRO9.182e-1138.46Strictosidine synthase OS=Catharanthus roseus GN=S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873464 ID=FC873464; Name=FC873464; organism=Citrus clementina; type=EST; length=739bp
TAGAGAACTTTTTATCATACGTCAATGGTTCTAAACTGAGGTTTGCAAAT
GATGTAGTTGAAGCATCAGATGGTAGTTTATATTTTACTGTATCAAGCTC
CAAATATTTACCCCACGAGTATTGCCTGGATATTCTTGAGGGGAAACCTC
ATGGTCAGCTACTCAAGTATGATCCTTCATCCAATATAACAACACTTGTG
GCTGATGGTTTCTACTTTGCTAATGGCGTTGCACTCTCAAGAGATGAAGA
TTATGTTGTTGTTTGTGAATCATGGAAATTCAGGTGCCGTAAGTATTGGC
TGAAGGGCGAGCGTAAAGGGAAATTAGAAACTTTCGCTGAAAACCTACCA
GGTGCACCTGATAACATCAACCTTGCCCCAGATGGCACATTTTGGATTGC
AATAATAAAGTTGGATGCTAGGAGGATGAAGGTTTTAAACAGTTCCAAGC
TAATCAAACATGTTCTAGCAGCATATCCGAAACTGTTCTCTCGATTCATC
ACCTTAGGCGGCGGAGCACACTTAATAAATGTTGCAGAAGATGGCACTAT
AATCAGAAATCTTGTTGATCCTACCGGACAGTTGATGTCGTTTGTGACCT
CAGGCTTGCAGGTTGATGATCATCTCTACATGATTAGCCTCACCTCTAAC
TTCATAGGGAAAGTGCAACTGAGTTAAGCTGCATAACTTGTGTCGAGAGA
AAATGGTTTCCTCAGGGAAAACTCCTGTCCCCAATTGAT
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