FC873474

Overview
NameFC873474
Unique NameFC873474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14838 contig Ccv1_Contig14838:6..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873474 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.024e-37
Identity = 66/94 (70.21%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  113 QNQAAGTGIAAS-QLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 391
            QNQ +   I    Q Q Q N    G ++G L+ Q+C PKC YRCS TSYKKPC+FFCQKCCAKCLCVPAGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct:   19 QNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of FC873474 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.295e-28
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  200 LNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 391
            L   +C P+C YRCSATS+KKPC+FFCQKCCA CLCVP G YGNKQ+CPCYNNWKT+ G PKCP
Sbjct:   33 LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of FC873474 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-23
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  194 GSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 391
            GSL   +C  +C  RC  T Y K C+ FC KCC KCLCVP G YGNKQ C CYNNWKT+ GGPKCP
Sbjct:   41 GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of FC873474 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  215 CAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 391
            C  KC  RCS       CL +C  CC +C CVP+GTYGNK  CPCY + K  +G  KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of FC873474 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 2
Query:  212 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 391
            +C  +C  RCS +S  K CL  C  CC++C CVP GT GN   CPCY +  T  G  KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of FC873474 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 2
Query:  212 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 391
            +C  +C  RCS +S    CL  C  CC +C CVP GT GN   CPCY +  T+ G  KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of FC873474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GAST1_SOLLC6.024e-3770.21Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC2.295e-2875.00Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH1.702e-2363.64Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
SNAK1_SOLTU7.166e-1450.85Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA2_ARATH8.760e-1248.33Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH3.329e-1146.67Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CE05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873474 ID=FC873474; Name=FC873474; organism=Citrus clementina; type=EST; length=574bp
CTCAAATCCACTTCAAGCTCTTATTGTTGTGTTGTTTCTTCTCCAAAGAA
TAATGGCCAGAATGCTGAGACTTGTTGTGTTATTTGTGGCATTGATGCTT
GTTTTAGTGGCACAAAACCAGGCTGCGGGCACAGGAATTGCAGCGTCTCA
GCTACAGGCACAAGGCAACCGCCCTGCGCGCGGTACCACCCAAGGGAGCC
TTAATCATCAAGAATGTGCTCCAAAATGCCATTATAGATGCTCAGCAACT
TCATACAAGAAGCCGTGCCTGTTTTTCTGCCAAAAATGTTGTGCAAAGTG
CTTATGTGTGCCGGCAGGCACATATGGGAACAAGCAAACGTGCCCTTGCT
ACAATAACTGGAAGACAAAGCGAGGAGGACCAAAATGCCCTTGAATTAAT
GGTATCAGTTTATAGTAATAAAATTTTCTATCGACACTAATCAGTTATAT
ATTTCCTATAATGCTTATTTTGCTATTGTAGCCAATCTTTCTTGTACTCG
TTTAGCAAGCATAAGTAATGTATTTTTCAATAAATTATAGAATATAATCT
GGGTCTAAAAAAAAAAAAAAAAAA
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