FC873573

Overview
NameFC873573
Unique NameFC873573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1239 contig Ccv1_Contig1239:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V++ D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V++ D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_YEAST2.099e-2475.00Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO2.099e-2475.00Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA2.099e-2475.00Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE2.099e-2475.00Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_COPCO2.099e-2475.00Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CANAL2.099e-2475.00Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_AGLNE2.741e-2475.00Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_TETPY3.580e-2473.68Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_NEUCR3.580e-2475.00Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_GEOCY3.580e-2473.68Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bp
AAAAGGGGGAAATTAAATGCAGATCTTCGAGAAAACCCTAACGGGGAAGA
CCATTAACCTCTAGGTCCAATCCCGCGACCCCATCCACCATGTCCAGGGC
AAGATCCAAGACCAGGAAGGTATTCCGCCGGACCACCGAACACTTATCTT
CTCTGGGAAGCGGCTTGAGGATGGCCGAACTCTATCCTATTACCATATCC
AAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCATGGTGGTATTATT
GAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGAT
CTGCCAAAAATGTTATGCGCGCCTGCCCCCCCGTGCTGTGAGCTGCGAGA
AGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCTGAGAACAAGATCAAG
TATATATTCTGCATACAAATGCTACATTTTATACTGAATCATGATGTTTT
GCCTATAATATGTAGCATCTACTATTGCCTAGTGATAGTTGTCACTTATT
ACTTGATTTCTGTTTCCAGATGTTTCCAGGGTTGAGAGTATTTGTAGACT
GATTACTATCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTT
GCCTGAATCTACTATTTTCTTACACTGATGTTTGATCACCAATCAATTTT
TCATAAAACAAAAAAAAAAAA
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