FC873623

Overview
NameFC873623
Unique NameFC873623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1244 contig Ccv1_Contig1244:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873623 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.119e-53
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 2
Query:  413 QVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNLLGRRKGNVPERVAL 766
            QVTRSVDT  G LSPQEQKTVDAIVKAS LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIMSKN DQ+RKETEFALSALMEIP QYKATIELNLLG R GN+P+R+ L
Sbjct:  288 QVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPL 405          
BLAST of FC873623 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.769e-51
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 2
Query:  413 QVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNLLGRRKGNVPERVAL 766
            QVTRSVDT  G LSPQEQKTVDAIV+AS+LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIM+KN  Q+ KETEFALSALMEIP QYKATIELNLLGRR G +PER  L
Sbjct:  254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPL 371          
BLAST of FC873623 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  479 AIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNLL 727
            AI  AS  PLSI++VGVGDGPW+MM  FDDNIP R FDNF FV+F ++M    +    +  FAL+ALMEIP QYKA  EL LL
Sbjct: 7463 AIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
The following BLAST results are available for this feature:
BLAST of FC873623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG1_ARATH6.119e-5388.14E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
RGLG2_ARATH9.769e-5185.59E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
CPNA2_CAEEL2.347e-2060.24Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CA05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873623 ID=FC873623; Name=FC873623; organism=Citrus clementina; type=EST; length=767bp
ATCATTTGCCCCCGTCATTGAAATGGCTATGTCTATCGTTGAGCAGAGTG
GTGGCCAGTACCATGTATTATTAATAATTGCTGATGGGCAGGTATTTGCT
TCTAGTGTCAATATAAACTCATTATAGCGAACAATTATTGGAAGACTTGT
TACTCAAACAACTAGCTAAATTTAGTGATAAATGAGAAAACAATTAAAAA
AACTTATTTCATTGTGGACAGAGTCTGTGATCACCCTGCATTTAGAGCCA
TCTTTTTATGAAATAATACGTGGCACTTATGATGACACTGGAGTGCCACA
TGTAATTGCTTAGAAAGAGTGGCACTAGCTCTCTCCAGAATGACAGCTAG
GTAGTTTTTGTTGCAATGATATGTTCCTCCAATGGTCATCATACCCACAT
GGATTATGGCCGCAGGTAACTAGAAGTGTTGATACAGTGCGTGGTTGCTT
AAGTCCTCAGGAGCAGAAGACAGTTGATGCAATTGTAAAAGCAAGCGAGC
TTCCCTTGTCAATTGTGCTAGTTGGGGTAGGAGATGGGCCCTGGGACATG
ATGAAAGAATTTGATGATAACATTCCTGCTCGAGCATTTGATAATTTTCA
GTTTGTGAATTTTACAGAAATCATGTCAAAGAATCATGATCAAACTCGAA
AGGAGACAGAATTTGCGCTTTCTGCTTTAATGGAAATTCCTTCTCAGTAT
AAAGCAACAATAGAGCTTAACCTACTGGGTCGCCGGAAGGGAAATGTTCC
AGAGAGGGTTGCCCTCC
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